View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_55 (Length: 238)
Name: NF11778_low_55
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 12165352 - 12165553
Alignment:
| Q |
17 |
cataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatggtctctgttgaactgctccaccat |
116 |
Q |
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| T |
12165352 |
cataggcagcagggttattaagaatatcaccaaagacaccataagtgtttccatatacaaacttggcatcagaatggtctctgttgaactgctccaccat |
12165451 |
T |
|
| Q |
117 |
tgatctgagtcctccattgtaagttccaaccatctgatttactgaatccacacaccttcctggtggggcaaatccattagctctttgattaggaatgcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12165452 |
tgatctgagtcctccattgtaagttccaaccatctgatttactgaatccacacaccttcctggtggggcaaatccattagctctttgattaggaatgcaa |
12165551 |
T |
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| Q |
217 |
cc |
218 |
Q |
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|| |
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| T |
12165552 |
cc |
12165553 |
T |
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