View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_57 (Length: 236)
Name: NF11778_low_57
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_57 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 86 - 236
Target Start/End: Complemental strand, 2582526 - 2582376
Alignment:
| Q |
86 |
ataattaaagccaattgaaaacacaaattgtatagcacaaaccttaaaccttgtaaacattgaacatgtctttcttcaaatcctatggaaaagtagatga |
185 |
Q |
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| T |
2582526 |
ataattaaagccaattgaaaacacaaattgtatagcacaaaccttaaaccttgtaaacattgaacatgtctttcttcaaatcctatggaaaagttgatga |
2582427 |
T |
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| Q |
186 |
acgtgatcaaatgatgttagaagcaaaaagaaaaacccgaaagagaatcac |
236 |
Q |
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| T |
2582426 |
acatgatcaaatgatgttagaagcaaaaagaaaaacccgaaagagaatcac |
2582376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 2582612 - 2582565
Alignment:
| Q |
6 |
ataataatcgttgacaaattaatgtgttactaactttcacactccctc |
53 |
Q |
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| T |
2582612 |
ataataatcgttgacaaatgaatgtgttactaactttcgcaatccctc |
2582565 |
T |
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