View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11778_low_59 (Length: 231)

Name: NF11778_low_59
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11778_low_59
NF11778_low_59
[»] chr7 (3 HSPs)
chr7 (73-201)||(1608830-1608960)
chr7 (81-180)||(2187860-2187960)
chr7 (73-180)||(19632944-19633053)
[»] chr5 (3 HSPs)
chr5 (73-180)||(37806540-37806650)
chr5 (117-180)||(37627431-37627495)
chr5 (86-165)||(33614707-33614785)
[»] chr8 (5 HSPs)
chr8 (81-180)||(29822632-29822733)
chr8 (126-180)||(7094160-7094216)
chr8 (126-180)||(7097893-7097949)
chr8 (126-165)||(45463058-45463097)
chr8 (132-201)||(454095-454166)
[»] chr1 (1 HSPs)
chr1 (81-201)||(41313952-41314075)
[»] chr2 (2 HSPs)
chr2 (126-201)||(19215544-19215621)
chr2 (132-187)||(19589281-19589337)
[»] chr4 (2 HSPs)
chr4 (86-161)||(637728-637803)
chr4 (143-185)||(11992147-11992190)
[»] chr3 (1 HSPs)
chr3 (132-180)||(8377591-8377641)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 1608960 - 1608830
Alignment:
Q  73 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 170  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1608960 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaaggaaaagggcgctccattttttattttatata 1608861  T
Q  171 tgtatttactggttgattgaatgatgatgtt 201  Q
    ||||||||||||||| || || |||||||||    
T  1608860 tgtatttactggttgtttaaaggatgatgtt 1608830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 2187860 - 2187960
Alignment:
Q  81 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttac 179  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  2187860 attcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttac 2187959  T
Q  180 t 180  Q
    |    
T  2187960 t 2187960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 19633053 - 19632944
Alignment:
Q  73 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 170  Q
    |||||||| |||||||||||||||||||| ||||| | || ||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  19633053 caagtgtagattcagtggagcaaagaccatgagtataaatattaatagctgctatattgttaaggtaagggaaagggcgctccattttttattttatata 19632954  T
Q  171 tgtatttact 180  Q
    ||||||||||    
T  19632953 tgtatttact 19632944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 37806650 - 37806540
Alignment:
Q  73 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatat 169  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||   |||||||    
T  37806650 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatat 37806551  T
Q  170 atgtatttact 180  Q
    |||||||||||    
T  37806550 atgtatttact 37806540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 37627495 - 37627431
Alignment:
Q  117 tagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttact 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  37627495 tagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttact 37627431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 33614785 - 33614707
Alignment:
Q  86 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccattttttattt 165  Q
    ||||||||||||||| | || || |||||| ||||  |||| | |||||||||||||||||||| ||||||| |||||||    
T  33614785 gtggagcaaagaccatgggttgaaatcttaatagcgactatct-gctaaggtaaggaaaagggcactccattatttattt 33614707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 29822632 - 29822733
Alignment:
Q  81 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtattta 178  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  29822632 attcagtggagcaaataccacgagttgaaatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatatatgtattta 29822731  T
Q  179 ct 180  Q
    ||    
T  29822732 ct 29822733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 7094216 - 7094160
Alignment:
Q  126 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 180  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7094216 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7094160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 7097949 - 7097893
Alignment:
Q  126 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 180  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7097949 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7097893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 45463097 - 45463058
Alignment:
Q  126 tattgctaaggtaaggaaaagggcgctccattttttattt 165  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45463097 tattgctaaggtaagggaaagggcgctccattatttattt 45463058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 454166 - 454095
Alignment:
Q  132 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttactggttgattgaatgatgatgtt 201  Q
    ||||||| || |||||||||||||||||||   |||||||||||| ||||| |||| |  ||||||||||||    
T  454166 taaggtacgggaaagggcgctccatttttttattttatatatgtagttacttgttgttaaaatgatgatgtt 454095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 41314075 - 41313952
Alignment:
Q  81 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt---atttatatatgtattt 177  Q
    |||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||||||||    |||||||||||| ||    
T  41314075 attccgtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagtt 41313976  T
Q  178 actggttgattgaatgatgatgtt 201  Q
    ||| |||| |  ||||||||||||    
T  41313975 acttgttgttaaaatgatgatgtt 41313952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 19215544 - 19215621
Alignment:
Q  126 tattgctaaggtaaggaaaagggcgctccattttt-ta-tttatatatgtatttactggttgattgaatgatgatgtt 201  Q
    ||||| |||||||||| |||||||||||||||||| || |||||||||||||||||| |||| |  ||||||||||||    
T  19215544 tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgtt 19215621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 19589281 - 19589337
Alignment:
Q  132 taaggtaaggaaaagggcgctccatttttta-tttatatatgtatttactggttgat 187  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||||| |||| ||||||    
T  19589281 taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttgat 19589337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 637728 - 637803
Alignment:
Q  86 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt 161  Q
    |||||||||||||||||||| || ||||||  |||||||   ||| |||||||||| |||| ||||||||| ||||    
T  637728 gtggagcaaagaccacgagttgaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctccatatttt 637803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 11992190 - 11992147
Alignment:
Q  143 aaagggcgctccatttttta-tttatatatgtatttactggttg 185  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  11992190 aaagggcgctccattttttattttatatatgtatttacttgttg 11992147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 8377591 - 8377641
Alignment:
Q  132 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 180  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  8377591 taaggtaagggaaagggcgctccatttttttattttatatatgtatttact 8377641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University