View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_60 (Length: 230)
Name: NF11778_low_60
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 9088119 - 9088200
Alignment:
| Q |
132 |
caaggtacctcaaatattttgataacgtttggatgattaatgatcttcatagctgaaatttctctcttcagctgccaaattc |
213 |
Q |
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| T |
9088119 |
caaggtacctcaaatattttgataacgtttggatgattaatgatcttcatagctgaaatttctctcttcagctgccaaattc |
9088200 |
T |
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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 9079342 - 9079423
Alignment:
| Q |
132 |
caaggtacctcaaatattttgataacgtttggatgattaatgatcttcatagctgaaatttctctcttcagctgccaaattc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9079342 |
caaggtacctcaaatattttgataacgtttggatgattaataatcttcatagctgaaatttctctcttcagctgccaaattc |
9079423 |
T |
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