View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_64 (Length: 214)
Name: NF11778_low_64
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 33860065 - 33859883
Alignment:
| Q |
19 |
aatagtacatggtttctgcaggaactccacattctccacctgaatctggagtgtcatagaaggatcctgagtttggccaatcacgttcgtgatttccact |
118 |
Q |
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| T |
33860065 |
aatagtacatggtttctgcaggaactccacattctccacctgaatctggagtgtcatagaaggatcctgagtttggccaatcacgttcgtgatttccact |
33859966 |
T |
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| Q |
119 |
gcagtatgaaaaaatgtagcatcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtc |
201 |
Q |
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| T |
33859965 |
gcagtatgaaaaaatgtagcatcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtc |
33859883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 33870416 - 33870237
Alignment:
| Q |
19 |
aatagtacatggtttctgcaggaactccacattctccacctgaatctggagtgtcatagaaggatcctgagtttggccaatcacgttcgtgatttccact |
118 |
Q |
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| T |
33870416 |
aatagtacatggtttctgcaggtactccacattctccaccagaatctggagtgtcatagaaggatcctgagtttggccaagagcgttcgtgatttccacc |
33870317 |
T |
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| Q |
119 |
gcagtatgaaaaaatgtagcatcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgat |
198 |
Q |
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| T |
33870316 |
gcagtatgaataaatgtgatatcctttcagtttaaaagaatatgtaaaactcaattcaaatttctatggcctaaaatgat |
33870237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 42784117 - 42784031
Alignment:
| Q |
41 |
aactccacattctccacctgaatctggagtgtcatagaaggatcctgagtttggccaatcacgttcgtgatttccactgcagtatga |
127 |
Q |
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| T |
42784117 |
aactccacactcgccgcctgaatctgtaacgtcataaaaggatcctgagttgggccaatcacgttcatgattaccactgcaggatga |
42784031 |
T |
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