View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11778_low_7 (Length: 588)
Name: NF11778_low_7
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 52158609 - 52158034
Alignment:
| Q |
1 |
cttgtagttagtataaatgtgaggaattagcatttgagacattagcttgcagtgtgttcttatcttgtttatatactggtaagattatcttggttgaaca |
100 |
Q |
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| T |
52158609 |
cttgtagttagtataaatgtgaggaattagcatttgagacattagcttgcagtgtgttcttatcttgtttatatactggtaagattatgttggttgaaca |
52158510 |
T |
|
| Q |
101 |
aaaagaatagaaagggaggtgagagcagaaatcttctttccactctgtgtaggtgattacatgtggtcaacctgtttactgctgcaattagttgtttaat |
200 |
Q |
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| T |
52158509 |
aaaagaatagaaagggaggtgagagcagaaatcttctttccactctgtgtaggtgattacatgtggtcaacctgtttactgctgcaattagttgtttaat |
52158410 |
T |
|
| Q |
201 |
tctttatttgtagaattgttggtgacaacatgttattttgtgtagcaaaagcgaaaactcaacggacaaaagcttttcttcgagttttaaagtattcgaa |
300 |
Q |
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| T |
52158409 |
tctttatttgtagaattgttggtgacaacatgttattttgtgtagcaaaagcgaaaactcaacggacaaaagcttttcttcgagttttaaagtattcgaa |
52158310 |
T |
|
| Q |
301 |
tggaggagttcttgaggtgatttcctactcatctctcttccttgcctctctgagacatgcttgattttgtactttgctgccatttccattccatttcacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52158309 |
tggaggagttcttgaggtgatttcctactcatctctcttccttgcctctctgagacatgcttgattttgtactttgctgccatttccattccatttcacg |
52158210 |
T |
|
| Q |
401 |
aaggaaccagagaagttggtttttccttgcatgttactagtattgatttcctgctcatcctattccataatccatcttccatgtgctggtttcccaagaa |
500 |
Q |
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| T |
52158209 |
aaggaaccagagaagttgctttttccttgcatgttactagtattgatttcctgctcatcctattccataatccatcttccatgtgctggtttcccaagaa |
52158110 |
T |
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| Q |
501 |
aggaaacaaaaagaccatataagaaaaatgatctttgtataactctagttgaaataatgctcataccacctttgct |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52158109 |
aggaaacaaaaagaccatataagaaaaatgatctttgtataactctagttgaaataatgctcataccacctttgct |
52158034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44066143 - 44066086
Alignment:
| Q |
1 |
cttgtagttagtataaatgtgaggaattagcatttgagacattagcttgcagtgtgtt |
58 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
44066143 |
cttgcagttagtataaatgtaaggaattagtgtttgagacattagcttgcaatgtgtt |
44066086 |
T |
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