View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11778_low_9 (Length: 552)
Name: NF11778_low_9
Description: NF11778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11778_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 540
Target Start/End: Original strand, 38029881 - 38030415
Alignment:
| Q |
7 |
ggagcactgccttttcaatacagtaaagtttgcaagaatacaaagtatgacccattttaaatcctgctagttccgtggaagagtgaaaacacaaaacacg |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38029881 |
ggagcactgccttttcaatgcagtaaagtttgcaagaatacaaagtatgacacattttaaatcctgctagttctgtggaagagtgaaaacacaaaacacg |
38029980 |
T |
|
| Q |
107 |
atgaaattcaatcattttgcaggagtctatccatatgaagacaagacttgcaacaacttccaagtatatttcatggttgattgaattttatgcatcctct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38029981 |
atgaaattcaatcattttgcaggagtctatccatatgaagacgagacttgcaacaacttccaagtatatttcatggttgattgaattttatgcatcctct |
38030080 |
T |
|
| Q |
207 |
agacttaagtggggttaaa-cgaagacaaaggctaagacgaagtaccattttagatgattcattttttaactacatttcaatggttcatgaaacattaca |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38030081 |
agacttaagtggggttaaaacgaagacaaaggctaagacaaagtaccattttagatgattcattttttaactacatttcaatggttcatgaaacattaca |
38030180 |
T |
|
| Q |
306 |
ctttttaaccatttgactaattcagacctcacaatgacatcatagatcttccatatcttatatatattcccaccttttaccttcaaccctaatccaccct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38030181 |
ctttttaaccatttgactaattcagacctcgcaatgacatcatagatcttccatatcttatatatattcccaccttttaccttcaaccctaatccaccct |
38030280 |
T |
|
| Q |
406 |
agggaactgtcaccctttgaccgaccctattccagccatcagcttgcctccgttatagaccgtggctcttgtgtcgtaaatatcactagagccactgtca |
505 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38030281 |
aggcaactgtcacccattgaccgaccctattccagccatcagcttgccttcgttatagatcgtggctcttgtgtcgtaaatatcactagagccactgtca |
38030380 |
T |
|
| Q |
506 |
ggttgtctcatacatgcattagatatgtctctgct |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
38030381 |
ggttgtctcatacatgcattagatatgtctttgct |
38030415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 38041319 - 38041407
Alignment:
| Q |
17 |
cttttcaatacagtaaagtttgcaagaatacaaagtatgacccattttaaatcctgctagttccgtggaagagtgaaaacacaaaacac |
105 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
38041319 |
cttttcaacgcagtgaagtttgcaagaatacaaagtatgacacattttaaattctgctagatccgtggaagagtgaaaacacgaaacac |
38041407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 38041434 - 38041512
Alignment:
| Q |
111 |
aattcaatcattttgcaggagtctatccatatgaagacaagacttgcaacaacttccaagtatatttcatggttgattgaattt |
194 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38041434 |
aattcaatcatgttgcatgagtctatccatat----aca-gacttgcaacagcttccaagtatatttcatggttgattgaattt |
38041512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 50907578 - 50907480
Alignment:
| Q |
11 |
cactgccttttcaatacagtaaagtttgcaagaatacaaagtatgacccattttaaatcctgctagttccgtggaagagtgaaaacacaaaacacgatg |
109 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||| |||| | | ||||||||| |||||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
50907578 |
cactgccttgacaatgcagtaaagcttgcaagaatacaagctatgtcataatttaaatccagctagttctgtggaagagtgaaaactcgaaacatgatg |
50907480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 50907458 - 50907376
Alignment:
| Q |
110 |
aaattcaatcattttgcaggagtctatccatatgaagacaagacttgcaacaacttccaagtatatttcatggttgattgaattt |
194 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||||||| ||| | |||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
50907458 |
aaattcaatcatgttgcaagattatatccatatgaaga--agattggcaacagcttcgaagtatatttcatggttggttgaattt |
50907376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 38034684 - 38034746
Alignment:
| Q |
11 |
cactgccttttcaatacagtaaagtttgcaagaatacaaagtatgacccattttaaatcctgc |
73 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
38034684 |
cactgccttttcaatgcaggaaagcctgcaagaatacaaagtatggcacattttaaatactgc |
38034746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 21605872 - 21606411
Alignment:
| Q |
7 |
ggagcactgccttttcaatacagtaaagtttgcaagaatacaaagtatgacccattttaaatcctgctagttccgtggaagagtgaaaacacaaaacacg |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21605872 |
ggagcactgccttttcaatgcagtaaagtttgcaagaatacaaagtatgacacattttaaatcctgctagttctgtggaagagtgaaaacacaaaacacg |
21605971 |
T |
|
| Q |
107 |
atgaaattcaatcattttgcaggagtctatccatatgaagacaagacttgcaacaacttccaagtatatttcatggttgattgaattttatgcatcctct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21605972 |
atgaaattcaatcattttgcaggagtctatccatatgaagactagacttgcaacaacttccaagtatatttcatggttgattgaattttatgcatcctct |
21606071 |
T |
|
| Q |
207 |
agacttaagtggggtt-aaacgaagacaaaggctaagacgaagtaccattttagatgattcattttttaactacatttcaatggttcatgaaacattaca |
305 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21606072 |
tgacttaagtggggttaaaacgaagacaaaggctaagacgaagtaccattttagatgattcattttttaactacatttcaatggttcatgaaacattaca |
21606171 |
T |
|
| Q |
306 |
ctttttaaccatttgactaattcagacctcacaatgac----atcatagatcttccatatcttatatatattcccaccttttaccttcaaccctaatcca |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21606172 |
ctttttaaccatttgactaattcagacctcgcaatgacatatatcatagatcttccatatcttatatatattcccaccttttaccttcaaccctaatcca |
21606271 |
T |
|
| Q |
402 |
ccctagggaactgtcaccctttgaccgaccctattccagccatcagcttgcctccgttatagaccgtggctcttgtgtcgtaaatatcactagagccact |
501 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21606272 |
ccctaggcaactgtcaccctttgaccgaccctattccagccatcagcttgtctccgttatagatcgtggctcttgtgtcgtaaatatcactagagccact |
21606371 |
T |
|
| Q |
502 |
gtcaggttgtctcatacatgcattagatatgtctctgctt |
541 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
21606372 |
gtcaggttgtctcatacatgcatttgatatgtctttgctt |
21606411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University