View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11779_low_1 (Length: 436)
Name: NF11779_low_1
Description: NF11779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11779_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 49567412 - 49567809
Alignment:
| Q |
1 |
aataatataaacacatatatgaattggcttacatttattagagcatgataaaaaacttgnnnnnnnnnnnnnnnnnnnnnattatgagtggtttgaccta |
100 |
Q |
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| T |
49567412 |
aataatataaacacatatatgaattggcttacatttattagagcatgataacaaacttgtgtttttttt-----------attatgagtggtttgaccta |
49567500 |
T |
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| Q |
101 |
tttgacaatggaaccaaaatt----caaagtacaaannnnnnngacatacgattagacaaaaggtataatttggttgactcgttcatcatggcacataat |
196 |
Q |
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| T |
49567501 |
tttgataatggaaccaaaattgatccaaagtacaaatttttttgacatacgattagacaaaaggtataatttggttgactcgttcattatggcacacaat |
49567600 |
T |
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| Q |
197 |
gccagacaaatgtactaagcaccttatctttcataccgacgacgcatacgggaatggtgtattgccatcaagacaaaacaaatttttagacgaagaagca |
296 |
Q |
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| T |
49567601 |
gccagacaaatgtactaagcaccttatctttcataccgacgacgcatacaggaatgatgtattgccatcaagacaaaacaaatttttagatgaagaagca |
49567700 |
T |
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| Q |
297 |
acataacaagataatggaatgtcacatgtttttgaagtaattgatgtcgaaccaataacaaatttggttgaccgagaagtttatggtcgacaagttgatg |
396 |
Q |
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| T |
49567701 |
acataacaagataatggaatgtcacatgtttttgaagtaattgatgttgaaccaataacaaatttggttgaccaagaagtttatggtcgacaagttgatg |
49567800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 273
Target Start/End: Original strand, 23960646 - 23960779
Alignment:
| Q |
140 |
gacatacgattagacaaaaggtataatttggttgactcgttcatcatggcacataatgccagacaaatgtactaagcaccttatctttcataccgacgac |
239 |
Q |
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| T |
23960646 |
gacatacgaatggacaaaaggtataatgcatttgacccattcatcatggcacataatgtcaaacaagtgtattatgtaccttatccttcgtttcagcaac |
23960745 |
T |
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| Q |
240 |
gcatacgggaatggtgtattgccatcaagacaaa |
273 |
Q |
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| T |
23960746 |
gcaaacgaggatggtgtgctgccatcaagacaaa |
23960779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 19133719 - 19133803
Alignment:
| Q |
140 |
gacatacgattagacaaaaggtataatttggttgactcgttcatcatggcacataatgccagacaaatgtactaagcaccttatc |
224 |
Q |
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| T |
19133719 |
gacatacgaatggacaaaaggtataatgcatttgacccattcatcatggcacataatgtcaaacaagtgtattatgtaccttatc |
19133803 |
T |
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