View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11779_low_3 (Length: 348)
Name: NF11779_low_3
Description: NF11779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11779_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 169 - 331
Target Start/End: Complemental strand, 6733564 - 6733402
Alignment:
| Q |
169 |
ttctaagttaccttgcgataggtggttccatcttcttcgaccgaccaaccagcttctgcacaaagagctttgaggacctcgttgttgtcacgatgcttcg |
268 |
Q |
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| T |
6733564 |
ttctaagttaccttgcgataggtggttccatcttcttcgaccgaccaaccagcttctgcacaaagagctttgaggacctcgttgttgtcacgatgcttcg |
6733465 |
T |
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| Q |
269 |
ataaattgtagctcccttgagctcgaagtccatcgaatatctttgttgttatggctctccttc |
331 |
Q |
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| T |
6733464 |
ataaattgtagctcccttgagttcgaagtccatcgaatatctttgttgttatggctctccttc |
6733402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 6733717 - 6733595
Alignment:
| Q |
16 |
ctaattacatatgaaaagtatcggattcacgtaattaaagtgtaaccaaaagatcagataattaagttagaacaacaataatgtagtataaatggatagt |
115 |
Q |
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| T |
6733717 |
ctaattacatatgaaaagtatcggattcacataattaaagtgtaaccaaaagatcagataattaagttagaacaacaataatgtagtataaatggatagt |
6733618 |
T |
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| Q |
116 |
tataggcatattgagcaagtaac |
138 |
Q |
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| T |
6733617 |
tataggcatattgagcaagtaac |
6733595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 52229775 - 52229692
Alignment:
| Q |
176 |
ttaccttgcgataggtggttccatcttcttcgaccgaccaaccagcttctgcacaaagagctttgaggacctcgttgttgtcac |
259 |
Q |
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| T |
52229775 |
ttaccctgcgataagtggtgccatcttcttcaacagtccaaccagcttcagcacaaagagctttcaagacctcattgttatcac |
52229692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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