View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11779_low_4 (Length: 276)
Name: NF11779_low_4
Description: NF11779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11779_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 122 - 275
Target Start/End: Original strand, 29990882 - 29991035
Alignment:
| Q |
122 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
221 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29990882 |
aaatggtcgcgctgagagaaagcatcattacattcttgactcagtctgtgtcatgcttatctcggcctcttgtccagaacgtgcttggggtgaagctgct |
29990981 |
T |
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| Q |
222 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccatggtgatgtc |
275 |
Q |
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|||||||||||||||| |||||||| |||||||| |||||||| |||| ||||| |
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| T |
29990982 |
cttactgctgtccatataatcaatcatctcccttattatgtccttggtaatgtc |
29991035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 275
Target Start/End: Original strand, 16502922 - 16503074
Alignment:
| Q |
123 |
aatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgctc |
222 |
Q |
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||||||||| ||||||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||| ||| |||||| |||||||||||||| |||| |
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| T |
16502922 |
aatggtcgcgctgagagaaagcatcgttacattcttgactcagtctgtgccatgcatatctcagcctcatgttcagaacgcgcttggggtgaagccgctc |
16503021 |
T |
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| Q |
223 |
ttactgctgtccatacaatcaatcgtctcccttcttatgtccatggtgatgtc |
275 |
Q |
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|||| |||||||||| ||||||||| ||| |||| | ||||| |||| ||||| |
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| T |
16503022 |
ttaccgctgtccatataatcaatcgcctctcttcctctgtccttggtaatgtc |
16503074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 24432025 - 24432159
Alignment:
| Q |
122 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
221 |
Q |
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||||||||| |||||||||| |||| |||||||||||||| ||| ||| |||||| ||||| |||||||||| ||||||||||||||||||||| || |
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| T |
24432025 |
aaatggtcgtgctgagagaaaacatcgtcacattcttgactttgtccgtgccatgcttatctcagcctcttgtcctgaacgtgcttggggtgaagcttct |
24432124 |
T |
|
| Q |
222 |
cttactgctgtccatacaatcaatcgtctcccttc |
256 |
Q |
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|||||||||||||| | ||||||||||| ||||| |
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| T |
24432125 |
cttactgctgtccacattatcaatcgtcttccttc |
24432159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29990118 - 29990214
Alignment:
| Q |
1 |
atgtttaagaaatgagctgaaatttggactttgaactggatattcctcacgagtcaaccatttgtgtcgctaccacacagtcttccattcaactttg |
97 |
Q |
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| T |
29990118 |
atgtttgataaatgagctgaaatttaaactttgaaccgcatattcctcacgagtcaaccatttgtgccgctatcacatagtcttccattcaactttg |
29990214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 53017292 - 53017139
Alignment:
| Q |
122 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
221 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||| ||||| ||||| |||| ||||| ||||||| |||||| ||| |
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| T |
53017292 |
aaatggtcgtgctgagagaaagcatcgtcacattcttgactcagtccgtgccatgcttatctcagcctcgtgtccagaacacgcttgggatgaagccgct |
53017193 |
T |
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| Q |
222 |
cttactgctgtccatacaatcaatcgtctcccttcttatgtccatggtgatgtc |
275 |
Q |
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||||| || ||||||| |||||||||||||||||| | ||||| |||| ||||| |
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| T |
53017192 |
cttaccgcagtccatataatcaatcgtctcccttcctctgtccttggtaatgtc |
53017139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 17451074 - 17451208
Alignment:
| Q |
122 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgct |
221 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||| ||| ||| |||||| ||||| |||||||||| ||||||||||||||||||||| || |
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| T |
17451074 |
aaatggtcgtgctgagagaaaacatcgtcacattcttgactctgtccgtgccatgcttatctcagcctcttgtcctgaacgtgcttggggtgaagcttct |
17451173 |
T |
|
| Q |
222 |
cttactgctgtccatacaatcaatcgtctcccttc |
256 |
Q |
| |
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|||||||||||||| | ||||||||||| ||||| |
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| T |
17451174 |
cttactgctgtccacattatcaatcgtcttccttc |
17451208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 14825789 - 14825884
Alignment:
| Q |
122 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagc |
217 |
Q |
| |
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||||||||| ||||||||||||||| || ||||||||| || || ||| |||||| ||||| |||||||||| |||||||||||| ||||||| |
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| T |
14825789 |
aaatggtcgtgctgagagaaagcatcgtcccattcttgattctgttcgtgccatgcttatctcagcctcttgtcctgaacgtgcttggtgtgaagc |
14825884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 5241961 - 5241904
Alignment:
| Q |
180 |
atctcggcctcttgtctagaacgtgcttggggtgaagctgctcttactgctgtccata |
237 |
Q |
| |
|
||||| |||||||||| | |||| ||||||||||||||||||||||| |||||||||| |
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| T |
5241961 |
atctcagcctcttgtccaaaacgcgcttggggtgaagctgctcttaccgctgtccata |
5241904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 20670207 - 20670069
Alignment:
| Q |
138 |
agaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgctt-ggggtgaagctgctcttactgctgtccat |
236 |
Q |
| |
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|||||||||| |||||||||||||||| | |||||||||| ||| | |||||||||| ||||||||||| ||||||||| |||||||||| || ||||| |
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| T |
20670207 |
agaaagcatcgtcacattcttgactcaattcgtgtcatgcttatcccagcctcttgtccagaacgtgcttgggggtgaagatgctcttactactatccat |
20670108 |
T |
|
| Q |
237 |
acaatcaatcgtctcccttcttatgtccatggtgatgtc |
275 |
Q |
| |
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| ||||||| |||||||||| | ||||| |||| ||||| |
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| T |
20670107 |
ataatcaattgtctcccttcctctgtccttggtaatgtc |
20670069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 12544402 - 12544543
Alignment:
| Q |
133 |
ctgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctcggcctcttgtctagaacgtgcttggggtgaagctgctcttactgctgt |
232 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| ||| |||||| || || || ||||||| ||| | | | ||||||||| |||||||||| ||| |
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| T |
12544402 |
ctgagagaaagcatcgtcacattcttgactcagtccgtgccatgcttatttcagcatcttgtccagatcacac-tagggtgaagccgctcttactgttgt |
12544500 |
T |
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| Q |
233 |
ccatacaatcaatcgtctcccttcttatgtccatggtgatgtc |
275 |
Q |
| |
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|||| |||||||| ||||||||| | ||||| |||| ||||| |
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| T |
12544501 |
tcatataatcaatcatctcccttcctctgtccttggtaatgtc |
12544543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 15269183 - 15269245
Alignment:
| Q |
122 |
aaatggtcgcactgagagaaagcatcatcacattcttgactcagtctgtgtcatgctaatctc |
184 |
Q |
| |
|
||||||| || ||||||||||||||| |||| ||||||||| ||| ||||||||||| ||||| |
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| T |
15269183 |
aaatggttgcgctgagagaaagcatcgtcacgttcttgacttagtttgtgtcatgcttatctc |
15269245 |
T |
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