View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11779_low_6 (Length: 253)
Name: NF11779_low_6
Description: NF11779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11779_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 64 - 237
Target Start/End: Original strand, 3598099 - 3598272
Alignment:
| Q |
64 |
aagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcacatc |
163 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3598099 |
aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatc |
3598198 |
T |
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| Q |
164 |
tcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttga |
237 |
Q |
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| T |
3598199 |
tcgaatcaagttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttga |
3598272 |
T |
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Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 4356973 - 4356753
Alignment:
| Q |
17 |
caaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaa |
116 |
Q |
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||||||||||||||||||||||||||| |||||| | ||| | |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
4356973 |
caaaggctaatacattattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaagaaagaaatataagaaataacagacaaa |
4356876 |
T |
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| Q |
117 |
gtagtagaaatgtgaatctcaatttcactactaaaaatagtcac--atctcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaatt |
214 |
Q |
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|||||||||| ||||||||||||||| ||| |||||||||||| ||||| | || |||| ||||| |||| ||||||| ||||| ||||||||||| |
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| T |
4356875 |
gtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatatgatgaata |
4356776 |
T |
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| Q |
215 |
ttatataaaaacactatagttga |
237 |
Q |
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| T |
4356775 |
ttatagaaaaacactatagttga |
4356753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 24455738 - 24455633
Alignment:
| Q |
19 |
aaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagt |
118 |
Q |
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||||||||| ||| ||||||||||| || ||| || |||||| |||||||||||| | |||||| ||| |||||||| | |||||||| || |||| |
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| T |
24455738 |
aaggctaatgcataattcaacaaaaataggatgatactcaatcagaagcatgaaata--gaggaaatgaagcaagaaatagatgaaataactaacgaagt |
24455641 |
T |
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| Q |
119 |
agtagaaa |
126 |
Q |
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|||||||| |
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| T |
24455640 |
agtagaaa |
24455633 |
T |
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