View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11779_low_7 (Length: 253)

Name: NF11779_low_7
Description: NF11779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11779_low_7
NF11779_low_7
[»] chr7 (2 HSPs)
chr7 (14-237)||(3597859-3598082)
chr7 (182-234)||(27962549-27962602)
[»] chr3 (4 HSPs)
chr3 (14-174)||(2251888-2252048)
chr3 (14-178)||(2252444-2252608)
chr3 (84-219)||(49233862-49233997)
chr3 (126-219)||(49234475-49234569)
[»] chr2 (1 HSPs)
chr2 (80-219)||(24455801-24455940)
[»] chr1 (1 HSPs)
chr1 (126-219)||(50862480-50862573)
[»] chr8 (2 HSPs)
chr8 (126-221)||(43228035-43228130)
chr8 (182-234)||(14839088-14839141)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 3597859 - 3598082
Alignment:
Q  14 agaagaaggacattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatc 113  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597859 agaagatggacattgttgcttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatc 3597958  T
Q  114 agtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagtta 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  3597959 agtccaccaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattacttcaaaccagctccaaatagtta 3598058  T
Q  214 agcacaaaaattgaatatgaatat 237  Q
    |||| ||| |||||||||||||||    
T  3598059 agcaaaaacattgaatatgaatat 3598082  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 27962549 - 27962602
Alignment:
Q  182 gaaaattaccttaaaccagctccaaatagttaagcacaaaaat-tgaatatgaa 234  Q
    |||||||||||| |||||||||  |||||||||||||||| || ||||||||||    
T  27962549 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 27962602  T

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Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 2252048 - 2251888
Alignment:
Q  14 agaagaaggacattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatc 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252048 agaagaaggacattgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatc 2251949  T
Q  114 agtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  2251948 agtccacaaactgaaaaccagctctgaattatgcagaaaaccgctaggaatttgctctgaa 2251888  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 2252608 - 2252444
Alignment:
Q  14 agaagaaggacattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatc 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||       
T  2252608 agaagaaggacattgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctatgttgcacaattga 2252509  T
Q  114 agtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattat 178  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2252508 tgtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattat 2252444  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 49233862 - 49233997
Alignment:
Q  84 agtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcaga 183  Q
    |||||| ||||||  ||| ||||| | || ||||||||  | ||||||||||||| |||||||||||||| ||||  || || ||||  |||||| ||||    
T  49233862 agtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcaga 49233961  T
Q  184 aaattaccttaaaccagctccaaatagttaagcaca 219  Q
    |||||||||| |||||||||  ||||||||||||||    
T  49233962 aaattaccttgaaccagctctgaatagttaagcaca 49233997  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 49234475 - 49234569
Alignment:
Q  126 gaaaaccagctctgaattatgca-gaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 219  Q
    ||||||||||||| ||||||||| ||||| ||||  || || ||||  |||||| || ||||||||||| |||||||||  |||| |||||||||    
T  49234475 gaaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaataattaagcaca 49234569  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 24455940 - 24455801
Alignment:
Q  80 ctgcagtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattatt 179  Q
    ||||| |||| ||||||  ||||||||  | || ||||||||  | ||||||||||||| |||||||||||||| ||||  || || ||||  ||||||     
T  24455940 ctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatg 24455841  T
Q  180 cagaaaattaccttaaaccagctccaaatagttaagcaca 219  Q
    |||||||||||||| |||||||||  ||||||||||||||    
T  24455840 cagaaaattaccttgaaccagctctgaatagttaagcaca 24455801  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 50862573 - 50862480
Alignment:
Q  126 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 219  Q
    ||||| ||||||| |||||||||||||| ||||  || || ||||  |||||| ||||||| |||||| |||||||||  ||||| ||||||||    
T  50862573 gaaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaatagataagcaca 50862480  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 43228130 - 43228035
Alignment:
Q  126 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcacaaa 221  Q
    |||| ||| |||| |||||||||||||| ||||  || ||  |||  |||||| |||||||||||||| ||||| |||  ||||||||||||||||    
T  43228130 gaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaa 43228035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 14839141 - 14839088
Alignment:
Q  182 gaaaattaccttaaaccagctccaaatagttaagcacaaaaat-tgaatatgaa 234  Q
    |||||||||||| |||||||||  |||||||||||||||| || ||||||||||    
T  14839141 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 14839088  T

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