View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_16 (Length: 521)
Name: NF11780_high_16
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 24828178 - 24827685
Alignment:
| Q |
20 |
gatacctcatccttgagctgctctacttcactggaggatgcaatttgtctaccagtaatgacttcaagtagaataacacctagctgataaatatcttctt |
119 |
Q |
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| T |
24828178 |
gatacctcatccttgagctgctctacttcactggaggatgcaatttgtctaccagtaatgacttcaagtagaataacacctagctgataaatatcttctt |
24828079 |
T |
|
| Q |
120 |
tttctgcatagtttgtgctgcacatggatttaaatttcaaaatactatcttaggatacactgaaatataacataaaatcaagtgattaattaagatgaga |
219 |
Q |
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| T |
24828078 |
tttctgcatagtttgtgctgcacatggatttaaatttcaaaatactatcttaggatacagtgaaatataacataagatcaagtgattaattaaaatgaga |
24827979 |
T |
|
| Q |
220 |
tataccttccattttgattcgcggaacttggttctttaacagtgctctgaaaattaatcagtgcataaatcattccatgttagaaacttagatgatcatg |
319 |
Q |
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| T |
24827978 |
tataccttccattttgattcgcggaacttggttcattaactgtgctctgaaaattaatcaatgcataaatcattccatgttagaaacttagatgatcatg |
24827879 |
T |
|
| Q |
320 |
caaatattactgnnnnnnnttaatcaaatcatgtattctgtcctaaccttagatggcaatggaattctgtatccactaacttttgcattaagactatcat |
419 |
Q |
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| T |
24827878 |
caaatattactgaaaaaaattaatcaaatcatgtattctgtcctaaccttagatggcaatggaattctgtatccactaacttttgcattaagactatcat |
24827779 |
T |
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| Q |
420 |
ctaacaaaatattctcaatcttgaaattgttgccaaatattccaggagcaactcctgtatgtaagaactgaactcctcttgcaattcctatgct |
513 |
Q |
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| T |
24827778 |
ctaacaaaatattctcaatcttgaaattgttgccaaatattccaggagcaactcctgtatgtaagaactgaactcctcttgcaattcctatgct |
24827685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 511
Target Start/End: Original strand, 16961902 - 16962036
Alignment:
| Q |
377 |
aatggaattctgtatccactaacttttgcattaagactatcatctaacaaaatattctcaatcttgaaattgttgccaaatattccaggagcaactcctg |
476 |
Q |
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|||||||| || |||||||||||||||| ||| ||| ||| || |||||||| ||||||||||| | ||||| ||| |||| |||||| |||||||| |
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| T |
16961902 |
aatggaatgctatatccactaacttttggattgagattattgtccaacaaaatgttctcaatctttatgttgtttccatatatgccaggattaactcctg |
16962001 |
T |
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| Q |
477 |
tatgtaagaactgaactcctcttgcaattcctatg |
511 |
Q |
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| T |
16962002 |
tatgtaagaattgaattcctctagcaatgcctatg |
16962036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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