View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_high_18 (Length: 513)

Name: NF11780_high_18
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_high_18
NF11780_high_18
[»] chr7 (6 HSPs)
chr7 (324-491)||(26630045-26630212)
chr7 (68-205)||(26629794-26629932)
chr7 (394-491)||(26614750-26614847)
chr7 (1-68)||(26629749-26629816)
chr7 (156-204)||(22085949-22085997)
chr7 (394-491)||(28770156-28770253)
[»] chr1 (2 HSPs)
chr1 (154-204)||(43134764-43134814)
chr1 (386-491)||(17998356-17998461)
[»] chr5 (3 HSPs)
chr5 (384-472)||(36562323-36562411)
chr5 (79-109)||(36562688-36562718)
chr5 (86-114)||(15799276-15799304)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 324 - 491
Target Start/End: Original strand, 26630045 - 26630212
Alignment:
Q  324 agaattaattcaaaggttacgacatcattaaactaagctctgccacctcatccctacaatgcctacagcaataaacctgccctccatgaacctcccacat 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||    
T  26630045 agaattaattcaaaggttacgacatcattaaactaagctctgccacctcatccctaccacgcctacaacaataaacctgccctccatgaaccccccacat 26630144  T
Q  424 gattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga 491  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  26630145 gattgcttccaaatgactccattcatcagtcccttgctccgccacaccactgaccatgacgacataga 26630212  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 26629794 - 26629932
Alignment:
Q  68 atatactctaaaatgtcataaaacatttcagattatataatccgaacggacttaacacagaaacatgaattttg-nnnnnnnggataagacatacatatg 166  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |||||||| |||||||||    
T  26629794 atataatctaaaatgtcataaaacatttcagattatataatccgaacggtcttaacacagaaacatgaattttgttttttttggataagatatacatatg 26629893  T
Q  167 gtaagaatttgatataaacaggcattcatgatcgtatag 205  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26629894 gtaagaatttgatataaacaggcattcatgatcgtatag 26629932  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 394 - 491
Target Start/End: Original strand, 26614750 - 26614847
Alignment:
Q  394 ataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga 491  Q
    ||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || || |||||||||||||||    
T  26614750 ataaacccgccttccatgaacctcccccatgattgcttccaaatgactccattcatcagtcccttgctccaccacatcattggccatgacggcataga 26614847  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26629749 - 26629816
Alignment:
Q  1 caaacacatacaaattttgaagtaaaaatagacacttttcgtattatataatctaaaatgtcataaaa 68  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26629749 caaacacttacaaattttgaagtaaaaaaagacacttttcgtattatataatctaaaatgtcataaaa 26629816  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 22085997 - 22085949
Alignment:
Q  156 acatacatatggtaagaatttgatataaacaggcattcatgatcgtata 204  Q
    |||||||||||||| ||| |||||||||||| ||| |||||||||||||    
T  22085997 acatacatatggtatgaaattgatataaacatgcactcatgatcgtata 22085949  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 491
Target Start/End: Complemental strand, 28770253 - 28770156
Alignment:
Q  394 ataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacggcataga 491  Q
    ||||||| | |||||||||||||||   |  |||||||| |||||||||||||||||| | |||| | ||||| ||||||| | ||||| || |||||    
T  28770253 ataaacccgtcctccatgaacctccgctagaattgcttccaaatgactccattcatcaataccttacgccaccacaccactaatcatgatggaataga 28770156  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 43134764 - 43134814
Alignment:
Q  154 agacatacatatggtaagaatttgatataaacaggcattcatgatcgtata 204  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  43134764 agacatacatatggtaagaatttgttataaacatgcattcatgatcgtata 43134814  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 491
Target Start/End: Original strand, 17998356 - 17998461
Alignment:
Q  386 ctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccaccactgaccatgacgg 485  Q
    |||| |||||||||  | |||||||||||||||   |  |||||||| |||||||||||||||||| | |||||| ||||| ||| ||| ||||||||||    
T  17998356 ctacggcaataaactcgtcctccatgaacctccactagaattgcttccaaatgactccattcatcaataccttgcaccaccacactactaaccatgacgg 17998455  T
Q  486 cataga 491  Q
     |||||    
T  17998456 aataga 17998461  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 472
Target Start/End: Complemental strand, 36562411 - 36562323
Alignment:
Q  384 gcctacagcaataaacctgccctccatgaacctcccacatgattgcttctaaatgactccattcatcagtcccttgctccaccccacca 472  Q
    |||||| ||||||||||||| | | ||||||||||  || ||||||||| ||||||| |||||  |||| |||||||||| || |||||    
T  36562411 gcctacggcaataaacctgctccctatgaacctcctccaggattgcttccaaatgacaccattgttcagacccttgctcccccacacca 36562323  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 109
Target Start/End: Complemental strand, 36562718 - 36562688
Alignment:
Q  79 aatgtcataaaacatttcagattatataatc 109  Q
    |||||||||||||||||||||||||||||||    
T  36562718 aatgtcataaaacatttcagattatataatc 36562688  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 15799276 - 15799304
Alignment:
Q  86 taaaacatttcagattatataatccgaac 114  Q
    |||||||||||||||||||||||||||||    
T  15799276 taaaacatttcagattatataatccgaac 15799304  T

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