View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11780_high_2 (Length: 877)
Name: NF11780_high_2
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 363 - 864
Target Start/End: Complemental strand, 4150452 - 4149954
Alignment:
| Q |
363 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4150452 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4150353 |
T |
|
| Q |
463 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaac |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4150352 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaat |
4150253 |
T |
|
| Q |
563 |
aggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgcagcatcgataagtagtaaatgtatagattaatcttaactaaaca |
662 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||| | | |||| |||||||| ||| |||||| |||||| |
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| T |
4150252 |
aggattacccttaaaatcaaagctacggagacttggagtagataactcgattttccaacattggtgagtaacaaatgtattgat---tcttaaataaaca |
4150156 |
T |
|
| Q |
663 |
agtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttat |
762 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4150155 |
agtgtgtcacttgatatgaacaggttttgttcttgaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggtcat |
4150056 |
T |
|
| Q |
763 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattg |
862 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |
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|
| T |
4150055 |
catcaccactaccatgaaaggcaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattg |
4149956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 363 - 864
Target Start/End: Complemental strand, 4166221 - 4165726
Alignment:
| Q |
363 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4166221 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4166122 |
T |
|
| Q |
463 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaac |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4166121 |
gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaat |
4166022 |
T |
|
| Q |
563 |
aggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgcagcatcgataagtagtaaatgtatagattaatcttaactaaaca |
662 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| || | | ||| |||||||| ||| |||||| |||||| |
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|
| T |
4166021 |
aggattacccttaaaatcaaagctacggagacttggagtagataactcgatttt---gcaacgttgaatagcaaatgtattgat---tcttaaataaaca |
4165928 |
T |
|
| Q |
663 |
agtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggttat |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4165927 |
agtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggtcat |
4165828 |
T |
|
| Q |
763 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattcagagaagttgggaataatggtgaatgataacaaaattg |
862 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| |
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|
| T |
4165827 |
catcaccactaccatgaaaggcaaagtattttagacacatgctggttaatgcaggcaaattcagagaagttgggaataatgatgaaggatgaccaaattg |
4165728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 4150858 - 4150693
Alignment:
| Q |
14 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
4150858 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4150759 |
T |
|
| Q |
114 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4150758 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4150693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 4166627 - 4166462
Alignment:
| Q |
14 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4166627 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4166528 |
T |
|
| Q |
114 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4166527 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4166462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 4150645 - 4150524
Alignment:
| Q |
170 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4150645 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4150546 |
T |
|
| Q |
270 |
aatttaaagcaagtcatgtttt |
291 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
4150545 |
agtttaaggcaagtcatgtttt |
4150524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 4166414 - 4166293
Alignment:
| Q |
170 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4166414 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4166315 |
T |
|
| Q |
270 |
aatttaaagcaagtcatgtttt |
291 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
4166314 |
agtttaaggcaagtcatgtttt |
4166293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 512 - 606
Target Start/End: Original strand, 13485324 - 13485418
Alignment:
| Q |
512 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
606 |
Q |
| |
|
||||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||| |||| |||||||||||| | | ||||||||||||||||| |
|
|
| T |
13485324 |
tacatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagata |
13485418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 13490165 - 13490242
Alignment:
| Q |
392 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaa |
469 |
Q |
| |
|
|||||||| |||||||| |||||| || ||||||||||| ||| || |||||||||||||||||||| |||||||| |
|
|
| T |
13490165 |
aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa |
13490242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 777419 - 777486
Alignment:
| Q |
392 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
459 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||| |||| |
|
|
| T |
777419 |
aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga |
777486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 606
Target Start/End: Original strand, 13490285 - 13490379
Alignment:
| Q |
512 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
606 |
Q |
| |
|
||||||||| |||||||||||||| | ||| ||| | ||||||||||| |||| |||| ||||| |||||| ||| |||||||||||||||| |
|
|
| T |
13490285 |
tacatgtttaatagaagagagatttctcttgctccgatggagtttctgaataggaataccatgaaactcaaaggtacaaagacttggagtagata |
13490379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 499 - 600
Target Start/End: Complemental strand, 32414368 - 32414267
Alignment:
| Q |
499 |
ctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttgg |
598 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||| | ||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
32414368 |
ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg |
32414269 |
T |
|
| Q |
599 |
ag |
600 |
Q |
| |
|
|| |
|
|
| T |
32414268 |
ag |
32414267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 617
Target Start/End: Original strand, 14288277 - 14288381
Alignment:
| Q |
513 |
acatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaa |
612 |
Q |
| |
|
|||||||| ||||||||||||||| | || |||||| |||||| |||| |||| ||||| ||||| |||| ||| |||||||||||| |||| ||||| |
|
|
| T |
14288277 |
acatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctcaa |
14288376 |
T |
|
| Q |
613 |
ttttg |
617 |
Q |
| |
|
|||| |
|
|
| T |
14288377 |
atttg |
14288381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 825
Target Start/End: Original strand, 43863685 - 43863747
Alignment:
| Q |
763 |
catcaccactaccatgaaaggaaaagtattttagacacaagctggttaatgcaggcaaattca |
825 |
Q |
| |
|
||||| |||| | ||||||||||||||| |||| | ||||| |||||||||| |||||||||| |
|
|
| T |
43863685 |
catcatcactgcgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattca |
43863747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 830
Target Start/End: Complemental strand, 52187280 - 52187235
Alignment:
| Q |
785 |
aaagtattttagacacaagctggttaatgcaggcaaattcagagaa |
830 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
52187280 |
aaagtactttagagacaagttggttaatgctggcaaattcagagaa |
52187235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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