View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_25 (Length: 424)
Name: NF11780_high_25
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 66 - 413
Target Start/End: Original strand, 42239959 - 42240319
Alignment:
| Q |
66 |
tgaagcaaatattatatgtacaaatcataaaaacagaacatgttttatctaggattacatgatttgaaggaacacaagtataatgaagaggctattcttt |
165 |
Q |
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| T |
42239959 |
tgaagcaaatattatatgtacaaatcataaaaacagaacatgttttatctaggattacatgatttgaaggaacacaagtataattaagaggctattcttt |
42240058 |
T |
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| Q |
166 |
ctgtgaaaagagtatcttcatacatcttgtactgtaaccttcaacaa---------------gacttctatcgattggtgaaaggattaatcttgataac |
250 |
Q |
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| T |
42240059 |
ctgtgaaaagagtatcttcatacat--tgtactttaaccttcaacaagaccccaaaagacaagacttctatcgattggtgaaaggattaatcttgataac |
42240156 |
T |
|
| Q |
251 |
aagacctggaaaaacatcatctgggtcatgaatatgtggattctcttcaacaataaatggatcaccacatttttcacttattgtatgaagagtctctcct |
350 |
Q |
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| T |
42240157 |
aagacctggaaaaacatcatctgggtcatgaatatgtggattctcttctacaataaatggatcaccacatttttcacttattgtatgaagagtctctcct |
42240256 |
T |
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| Q |
351 |
tcacgaaccacatatatctcatcacacgctttgttgttattggcaatcctctgcttcatctca |
413 |
Q |
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| T |
42240257 |
tcacgaaccacatatatctcatcacacgctttgttgttattggcaatcctctgcttcatctca |
42240319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 230 - 385
Target Start/End: Complemental strand, 26303343 - 26303188
Alignment:
| Q |
230 |
gaaaggattaatcttgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttcaacaataaatggatcaccacatttttcactt |
329 |
Q |
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| T |
26303343 |
gaaagggttaattttgataacaaggccagggaaaacatcatcaggatcatgaatatgtggattctcttcaacaatataaggatcaccacacttttcactt |
26303244 |
T |
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| Q |
330 |
attgtatgaagagtctctccttcacgaaccacatatatctcatcacacgctttgtt |
385 |
Q |
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| T |
26303243 |
attgtttgaagtgtctctccctcgccaacaacgtatatctcatcacacactttgtt |
26303188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 384
Target Start/End: Complemental strand, 45924517 - 45924377
Alignment:
| Q |
244 |
tgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttcaacaataaatggatcaccacatttttcacttattgtatgaagagt |
343 |
Q |
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| T |
45924517 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
45924418 |
T |
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| Q |
344 |
ctctccttcacgaaccacatatatctcatcacacgctttgt |
384 |
Q |
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| T |
45924417 |
ttcaccttctcccacaacatatatctcatcacatgctttgt |
45924377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 384
Target Start/End: Complemental strand, 45936465 - 45936325
Alignment:
| Q |
244 |
tgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttcaacaataaatggatcaccacatttttcacttattgtatgaagagt |
343 |
Q |
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||||||||||||| || |||||||||||||| ||||| |||||||||||| || |||||||| || |||||||| |||||||| ||||| | || || |
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| T |
45936465 |
tgataacaagaccagggaaaacatcatctggatcatggatatgtggattcctctctacaataaacgggtcaccacacttttcactgattgtgttgagtgt |
45936366 |
T |
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| Q |
344 |
ctctccttcacgaaccacatatatctcatcacacgctttgt |
384 |
Q |
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| T |
45936365 |
ttcaccttctcccacaacatatatctcatcacatgctttgt |
45936325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 364
Target Start/End: Original strand, 12631266 - 12631392
Alignment:
| Q |
238 |
taatcttgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttcaacaataaatggatcaccacatttttcacttattgtatg |
337 |
Q |
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||||||||||||||||||| || || |||||||| |||||||||||||| ||||| | ||||||||||| |||||| ||| || ||||| ||||| | |
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| T |
12631266 |
taatcttgataacaagaccagggaagacatcatcagggtcatgaatatgaggattattctcaacaataaaaggatcattacacttatcactaattgtgtt |
12631365 |
T |
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| Q |
338 |
aagagtctctccttcacgaaccacata |
364 |
Q |
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| T |
12631366 |
aagtgtctcaccttcaccaaccacata |
12631392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 364
Target Start/End: Original strand, 12618450 - 12618576
Alignment:
| Q |
238 |
taatcttgataacaagacctggaaaaacatcatctgggtcatgaatatgtggattctcttcaacaataaatggatcaccacatttttcacttattgtatg |
337 |
Q |
| |
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|||| ||||| ||||| || || || |||||||| |||||||| ||||| ||||| | ||||||||||| |||||| ||| || ||||| ||||| | |
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| T |
12618450 |
taattttgatgacaaggccagggaagacatcatcagggtcatgtatatgaggattgttctcaacaataaaaggatcattacacttatcactaattgtgtt |
12618549 |
T |
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| Q |
338 |
aagagtctctccttcacgaaccacata |
364 |
Q |
| |
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||| ||||| ||||||| ||| ||||| |
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| T |
12618550 |
aagtgtctcaccttcaccaactacata |
12618576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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