View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_high_27 (Length: 414)

Name: NF11780_high_27
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_high_27
NF11780_high_27
[»] chr7 (2 HSPs)
chr7 (223-394)||(39386463-39386638)
chr7 (43-150)||(39386296-39386390)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 39386463 - 39386638
Alignment:
Q  223 ccctttctattctcccgcattttccctaatcttttttaccgtac----ttagtcgtcctttagaactgtgagggtcgaggacatgtatctgaattgtttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  39386463 ccctttctattctcccgcattttccctaatcttttttaccgtacatgattagtcgtcctttagaactgtgagggtcga---catgtatctgaattgtttg 39386559  T
Q  319 aaaacattgggtacattattgacat---ttgttaagtaaaaaaaagagattacgcaacaagtgatatgttcgatattgt 394  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39386560 aaaacattgggtacattattgacatttgttgttaagtaaaaaaaagagattacgcaacaagtgatatgtccgatattgt 39386638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 39386296 - 39386390
Alignment:
Q  43 ttggtcatatcattcttaagaagattgaggatgtcatttgaaaaagaagcatgaatgagaaggtatgtattctcaaaagttaattcatttaacttaatat 142  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||||||             |||||||||||||||||||||||||||||||||||||||    
T  39386296 ttggtcgtatcattcttaagaagattgatgatgttatttgaaaaagaa-------------ggtatgtattctcaaaagttaattcatttaacttaatat 39386382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University