View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_3 (Length: 844)
Name: NF11780_high_3
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 81 - 827
Target Start/End: Complemental strand, 33903841 - 33903116
Alignment:
| Q |
81 |
acaaaatgaataagtaggagggtgtgacctaatatggacaggcgtggactatgggatcatagtatgacagacaagtgtggcacattgattattattcact |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
33903841 |
acaaaatgaataagtaggagggtgtgacctaatatggacaggcgtggactatgggatcatagcatgacagacaagtgtggcacattgattattatttact |
33903742 |
T |
|
| Q |
181 |
gtcattgctaaatcatgctttaagaacttcttatatttctctatcttcaatgtcaacaccaacaaaagactaagcattgaagaataccatagataagaat |
280 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903741 |
gtcattgctaaatcatgctttaagaagttcttatatttctctatcctcaatgtcaacaccaacaaaagactaagcattgaagaataccatagataagaat |
33903642 |
T |
|
| Q |
281 |
aatcacatattcatggtagtctgtttactttttaaaagtattcttcatgagctataggttattattgtatttgtgtagtttatatctatctattgtaatt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903641 |
aatcacatattcatggtagtctgtttactttttaaaagtattcttcatgagctataggttattattgtatttgtgtagtttatatctatctattgtaatt |
33903542 |
T |
|
| Q |
381 |
gatgtgtaattttggtcttccaataatttttggtgcaggaccaaacttcggtaagagccaagagcatatctaaatccacttaataacaactaagatgtga |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33903541 |
gatgtgtaattttggtcttccaataatttttggtgcaggaccaaacttcggtaagagccaagagcatatctaagtccacttaataacaactaagatgtga |
33903442 |
T |
|
| Q |
481 |
ttattaattaaactaaagtaactgaagggaccttaattgtaacattattcgtttggctgggcctcttctctggcttattttatgccctttattccatatg |
580 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33903441 |
ttat------------------tgaagggaccttaattgtaacattattcgtttggctgggcctcttctctggcttattttatgccctttattccatatg |
33903360 |
T |
|
| Q |
581 |
cacatatatacatacattgaaaagacatataatatccatattattcaattcagttagccagtcttaatcattcgtctatatatgtgtgctgttgattgcc |
680 |
Q |
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| T |
33903359 |
cacatatatacatgcattgaaaagacatatagtatccatattattcaattcagttagccagtcttaatcattcgtctatatatgtgtgctgttgattgcc |
33903260 |
T |
|
| Q |
681 |
ttcactaatgtaataactacaaagatggcaagnnnnnnnccaaataatgtttatgcgttgtcaatcaaatttatataattgattgctgtcatccctcacg |
780 |
Q |
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| T |
33903259 |
ttcactaatgtaatcactacaaagatggcaagaaaaaaacca---aatgtttatgcgttgtcaatcaaatttatataattgattgctgtcatccctcacg |
33903163 |
T |
|
| Q |
781 |
ctaatcaattaactatagcggtttaatcataccttcatagtcaagtc |
827 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
33903162 |
ctaatcaattaactacagcggtttaatcacaccttcatagtcaagtc |
33903116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 33908301 - 33908232
Alignment:
| Q |
12 |
tgagatgaattcccctatccctaaatgcttgccgattttggttaacatgtaatttatttttaggtaaaaac |
82 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33908301 |
tgagatgaattccc-tatccctaaatgcttgccgattttggttaacatgtaatttatttttaggtaaaaac |
33908232 |
T |
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