View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11780_high_32 (Length: 370)
Name: NF11780_high_32
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_32 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 43 - 370
Target Start/End: Complemental strand, 3037122 - 3036795
Alignment:
| Q |
43 |
ccccctcccatcatgataaactttgcaagtatctttcgtaaacataattgtaaattcttcttctgaagttggccaatactaagtaaattgtttctaagtc |
142 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3037122 |
ccccctcctatcatgataaactttgcaagtatcttttgtaaacataattgtaaattcttcttctgaagttggccaatactaagtaaattgtttctaagtc |
3037023 |
T |
|
| Q |
143 |
taggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaagtcacctcttcctataaatgacattcttgaatcatcacctaa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
3037022 |
taggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaagtcacctcttcccataactgacattcttgaatcatcacctaa |
3036923 |
T |
|
| Q |
243 |
ctttaatgattctctaaagttattatcaaacttcaataaccaatcctttctccctatcatatgatttgagcaacctgaatcaagaaaccatacctcatct |
342 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036922 |
cttcaatgattctctaaagttattatcaaaattcaataaccaatcctttgtccctatcatatgatttgagcaacctgaatcaagaaaccatacctcatct |
3036823 |
T |
|
| Q |
343 |
ttggcattggtgttcatgcatgattgag |
370 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
3036822 |
ttggcatttgtgttcatgcatgattgag |
3036795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 44 - 368
Target Start/End: Original strand, 40612514 - 40612839
Alignment:
| Q |
44 |
cccctcccatcatgataaactttgcaagtatctttcgtaaacataattgtaa-attcttcttctgaagttggccaatactaagtaaattgtttctaagtc |
142 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||| |||| | |||||| | |||||||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40612514 |
cccctctcctcatgatatactttgcaagtatctttcttaaaaacaattgttagattcttctgctgaagttgtccaatactaagaaaattgtttctaagtc |
40612613 |
T |
|
| Q |
143 |
taggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaagtcacctcttcctataaatgacattcttgaatcatcacctaa |
242 |
Q |
| |
|
||| | ||||||||||| |||||||| | |||||| |||||||| || || ||||||| |||||||| |||| |||||| ||||||||||||| |
|
|
| T |
40612614 |
caggaagataatacacatttgttatgacttaaatcatgccaccaataagcaatttcaagtttcctcttcccataacaagcattctggaatcatcacctag |
40612713 |
T |
|
| Q |
243 |
ctttaatgattctctaaagttattatcaaacttcaataaccaatcctttctccctatcatatgatttgagcaacctgaatcaagaaaccatacctcatct |
342 |
Q |
| |
|
|| | |||||||||||| | | ||||||| | |||| ||| |||||| | ||||||||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
40612714 |
tttcactgattctctaaactcactatcaaaatcaaatagccactcctttgttcctatcatatgatttgaacagctagaatcaagaaaccatacctcatct |
40612813 |
T |
|
| Q |
343 |
ttggcattggtgttcatgcatgattg |
368 |
Q |
| |
|
||||| || ||||||| ||| ||||| |
|
|
| T |
40612814 |
ttggcgtttgtgttcaagcaagattg |
40612839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 27981987 - 27982146
Alignment:
| Q |
44 |
cccctcccatcatgataaac-tttgcaagtatctttcgtaaacataattgta-aattcttcttctgaagttggccaatactaagtaaattgtttctaagt |
141 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||| ||||||||||||| |||||| || || |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
27981987 |
cccctctcatcatgataaacgttttcaagtatctttcttaaacataattgttcaattctcctgctaaagttgtccaatactaagtaaactgtttctaagt |
27982086 |
T |
|
| Q |
142 |
ctaggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaag |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
27982087 |
ccaggcaagtaatacacattagttatgacctaaatcataccaccaatgagtaatttcaag |
27982146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 28039289 - 28039448
Alignment:
| Q |
44 |
cccctcccatcatgataaac-tttgcaagtatctttcgtaaacataattgta-aattcttcttctgaagttggccaatactaagtaaattgtttctaagt |
141 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||| ||||||||||||| |||||| || || |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28039289 |
cccctctcatcatgataaacgttttcaagtatctttcttaaacataattgttcaattctcctgctaaagttgtccaatactaagtaaactgtttctaagt |
28039388 |
T |
|
| Q |
142 |
ctaggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaag |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
28039389 |
ccaggcaagtaatacacattagttatgacctaaatcataccaccaatgagtaatttcaag |
28039448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 44 - 370
Target Start/End: Complemental strand, 20542797 - 20542469
Alignment:
| Q |
44 |
cccctcccatcatgataaactttgcaagtatctttcgtaaacataattgtaa-attcttcttctgaagttggccaatactaagtaaattgtttctaagtc |
142 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||| |||| | |||||| | |||||||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
20542797 |
cccctctcctcatgatatactttgcaagtatctttcttaaaaacaattgttagattcttctgctgaagttgtccaatactaagaaaattgtttctaagtc |
20542698 |
T |
|
| Q |
143 |
taggcaagtaatacacattagtt-atgacctgaatcataccaccaatgagtaacttcaagtcacctcttcctataaatgacattcttgaatcatcaccta |
241 |
Q |
| |
|
||| | |||||||||| || ||||| |||||||| |||||||| || || ||||||| |||||||| |||| | |||||| ||||||||||||| |
|
|
| T |
20542697 |
caggaagaaaatacacatttttttatgacttgaatcatgccaccaataagcaatttcaagtttcctcttcccataacaggcattctagaatcatcaccta |
20542598 |
T |
|
| Q |
242 |
actttaatgattctctaaagttattatcaaacttcaataaccaatcctttctccctatcatatgatttgagcaacctgaatcaagaaaccatacctcatc |
341 |
Q |
| |
|
||| | |||||||||||| | | ||||||| | |||| ||| || ||| | ||||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
20542597 |
gcttcattgattctctaaactcactatcaaaatcaaatagccactcatttgttcctatcatatgatttgaacagccaaaatcaagaaaccatacctcatc |
20542498 |
T |
|
| Q |
342 |
tttggcattggtgttcatgcatgattgag |
370 |
Q |
| |
|
|||||| || ||||||| ||| ||||||| |
|
|
| T |
20542497 |
tttggcgtttgtgttcaagcaagattgag |
20542469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 16863843 - 16863674
Alignment:
| Q |
44 |
cccctcccatcatgataaactttgcaagtatctttcgtaaacataattgt-aaattcttcttctgaagttggccaatactaagtaaattgtttctaagtc |
142 |
Q |
| |
|
|||||| | |||||||| || ||||||||||||||| |||| | |||||| ||| |||||| ||||||||| ||||||||||| ||||| ||| |||||| |
|
|
| T |
16863843 |
cccctctcttcatgatataccttgcaagtatctttcttaaaaacaattgttaaactcttctactgaagttgtccaatactaagaaaattatttataagtc |
16863744 |
T |
|
| Q |
143 |
taggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaagtcacctcttcc |
212 |
Q |
| |
|
||| | ||||||||||||||| |||| |||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
16863743 |
caggaagataatacacattagttgtgacttgaatcataccaccaatgagcaatttcaagttacctcttcc |
16863674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 370
Target Start/End: Complemental strand, 16863663 - 16863542
Alignment:
| Q |
249 |
tgattctctaaagttattatcaaacttcaataaccaatcctttctccctatcatatgatttgagcaacctgaatcaagaaaccatacctcatctttggca |
348 |
Q |
| |
|
|||||||||||||||| | ||||| | |||| |||||| ||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16863663 |
tgattctctaaagttactgtcaaaatcaaatagccaatcttttgttcctatcatatggtttgaacaacctgaatcaagaaaccatacctcatctttggca |
16863564 |
T |
|
| Q |
349 |
ttggtgttcatgcatgattgag |
370 |
Q |
| |
|
|| ||||||| |||||||||| |
|
|
| T |
16863563 |
tttgtgttcaaacatgattgag |
16863542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 358
Target Start/End: Complemental strand, 20529476 - 20529175
Alignment:
| Q |
44 |
cccctcccatcatgata-aactttgcaagtatctttcgtaaacataattgtaaat-tcttcttctgaagttggccaatactaagtaaattgtttctaagt |
141 |
Q |
| |
|
|||||| ||||||||| ||| ||||| ||||||||| |||||| |||||| || |||| | |||||||| ||||||| ||||| |||||||| |
|
|
| T |
20529476 |
cccctctcatcatgattgaaccttgcaggtatctttcttaaacacaattgtcaagctcttttgctgaagttttccaatac-----aaattatttctaagc |
20529382 |
T |
|
| Q |
142 |
ctaggcaagtaatacacattagttatgacctgaatcataccaccaatgagtaacttcaagtcacctcttcctataaatgacattcttgaatcatcaccta |
241 |
Q |
| |
|
| | |||||||||| ||||| ||||| || |||||||||||||||||||||||||||| | ||||||| | |||| ||||||| | || ||||| |||| |
|
|
| T |
20529381 |
ccatgcaagtaataaacattggttataacatgaatcataccaccaatgagtaacttcatattacctctttccataactgacattttggagtcatctccta |
20529282 |
T |
|
| Q |
242 |
actttaatgattctctaaagttattatcaaacttcaataaccaatcctttctccctatcatatgatttgagcaacctgaatcaagaaaccatacctcatc |
341 |
Q |
| |
|
| || | || ||||| |||||| | ||||||||||||||| | |||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
20529281 |
atttcattg----------gttatcatcaaaatcaaataaccaatcctttgttcctatcatatgattataataaccttaatcaagaaaccatacctcatc |
20529192 |
T |
|
| Q |
342 |
tttggcattggtgttca |
358 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
20529191 |
tttgacatttgtgttca |
20529175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University