View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11780_high_33 (Length: 367)
Name: NF11780_high_33
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 70 - 293
Target Start/End: Original strand, 26637740 - 26637963
Alignment:
| Q |
70 |
agtcaactgttgtataaaattggaaaggaagagaatgaataagaggttaaggattaagtcgaaagtaggtgaaagcttaaaggtgcatataatatgaaag |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26637740 |
agtcaactgttgtataaaattggaaaggaagagaatgaataagaggttaaggattaagttgaaagtaggtgaaagcttaaaggtgcatataatatgaaag |
26637839 |
T |
|
| Q |
170 |
taagagacattatgttagtgtagtctactgtttttaatcttagttcctctcttcctttcgatcgttgtctttcccttcttgtagaacaacttgagaaata |
269 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26637840 |
taagagatattatgttagtgtagtgtattgtttttaatcttagttcctctctttctttcgatcgttgtctttcccttcttgtagaacaacttgagaaatg |
26637939 |
T |
|
| Q |
270 |
gatactacaccaccgaaccaatat |
293 |
Q |
| |
|
|||| ||||||| |||||||||| |
|
|
| T |
26637940 |
gatataacaccacggaaccaatat |
26637963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 70 - 299
Target Start/End: Original strand, 26629353 - 26629582
Alignment:
| Q |
70 |
agtcaactgttgtataaaattggaaaggaagagaatgaataagaggttaaggattaagtcgaaagtaggtgaaagcttaaaggtgcatataatatgaaag |
169 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
26629353 |
agtcaactgttgtattaaattggaaaggaagagaatgaataagaggttaagaattaagttgaaagtaggtgatagcttaatggtgcatataatatgaaag |
26629452 |
T |
|
| Q |
170 |
taagagacattatgttagtgtagtctactgtttttaatcttagttcctctcttcctttcgatcgttgtctttcccttcttgtagaacaacttgagaaata |
269 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629453 |
taagagatattatgttagtttagtctattgtttttaatcttagttcctctctttctttcgatcgttgtctttcccttcttgtagaacaacttgagaaatg |
26629552 |
T |
|
| Q |
270 |
gatactacaccaccgaaccaatatctattt |
299 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
26629553 |
gatacaacaccaccgaaccaatatctattt |
26629582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 70 - 274
Target Start/End: Original strand, 26614294 - 26614498
Alignment:
| Q |
70 |
agtcaactgttgtataaaattggaaaggaagagaatgaataagaggttaaggattaagtcgaaagtaggtgaaagcttaaaggtgcatataatatgaaag |
169 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
26614294 |
agtcaattgttgtataaaattggaagtgaaaagaatgtataagaggttaaggattaaggtgaaagtagatgaaagtttaaaggtgcatataatatgaatg |
26614393 |
T |
|
| Q |
170 |
taagagacattatgttagtgtagtctactgtttttaatcttagttcctctcttcctttcgatcgttgtctttcccttcttgtagaacaacttgagaaata |
269 |
Q |
| |
|
||||||| |||||||||||||||| || || ||| |||| | ||||||||||| ||||| |||||||| |||||| |||| ||||||||||||| |||| |
|
|
| T |
26614394 |
taagagatattatgttagtgtagtgtattgctttaaatcgttgttcctctctttctttcaatcgttgtgtttcccatcttttagaacaacttgaaaaatt |
26614493 |
T |
|
| Q |
270 |
gatac |
274 |
Q |
| |
|
||||| |
|
|
| T |
26614494 |
gatac |
26614498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 26717297 - 26717402
Alignment:
| Q |
86 |
aaattggaaaggaagagaatgaataagaggttaaggattaagtcgaaagtaggtgaaagcttaaaggtgcatataatatgaaagtaagagacattatgtt |
185 |
Q |
| |
|
||||| ||| |||| |||||||||| ||||||||||| |||| |||| ||| |||||| |||||||||||||||||||||| ||||||| || ||| | |
|
|
| T |
26717297 |
aaattagaagggaaaagaatgaataggaggttaaggagaaagttgaaaatagatgaaaggttaaaggtgcatataatatgaatataagagaaataatgat |
26717396 |
T |
|
| Q |
186 |
agtgta |
191 |
Q |
| |
|
|||||| |
|
|
| T |
26717397 |
agtgta |
26717402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 26614204 - 26614247
Alignment:
| Q |
23 |
aatgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26614204 |
aatgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
26614247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 26629166 - 26629208
Alignment:
| Q |
24 |
atgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629166 |
atgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
26629208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 26637651 - 26637693
Alignment:
| Q |
24 |
atgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26637651 |
atgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
26637693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 26629265 - 26629306
Alignment:
| Q |
25 |
tgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629265 |
tgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
26629306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 26649735 - 26649779
Alignment:
| Q |
22 |
caatgtatcatgaatttggtcatgtgaattaaacatcattttcaa |
66 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
26649735 |
caatgtatcatgaatttcgtcctgtgaattaaacatcattttcaa |
26649779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 26629625 - 26629668
Alignment:
| Q |
303 |
tttgattggattctaaagtccaaaaacttcagaaactgttggaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
26629625 |
tttgattggattctaaagtccaaaaacttcataaattgttggaa |
26629668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University