View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_41 (Length: 298)
Name: NF11780_high_41
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 52590675 - 52590397
Alignment:
| Q |
1 |
aatttttcatctggaaatacactccaaggtaattataaattggaagaagagtcacgagacaatgtacagattattgctagtgatcatagtgtacaacaag |
100 |
Q |
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| T |
52590675 |
aatttttcatctggaaatacactccaaggtaataataaattggaagaagagtcacaagacaatgtacaaattattgatagtgatcatagtgtacaaaaag |
52590576 |
T |
|
| Q |
101 |
cctcttccactagagaacatgtagnnnnnnntgtgatagattgtggaaatggaaaattgcatggtaaccaaaggctcagcataaaaagtggcttttattc |
200 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590575 |
cctcttccactagaaaacatgtagaaaaaaatgtgatagattgtggaaatggaaaattgcatggtaaccaaaggctcagcataaaaagtggcttttattc |
52590476 |
T |
|
| Q |
201 |
acaaatagattctgattctgccacatatgatttaacagagttgggtaactttacaactgtggagagtggtggccacaac |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52590475 |
acaaatagattctgattctgccacatatgatttaacagagttgggtaactttacaactgtggagagtggtggccacaac |
52590397 |
T |
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