View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_42 (Length: 288)
Name: NF11780_high_42
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 38398113 - 38398384
Alignment:
| Q |
1 |
tttatatattattttaatgttaatgtgcagcatgctcaaaacgcttgagaggtatcagaaatgcaattatggagcacctgaggctaatgctcactcaaag |
100 |
Q |
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| T |
38398113 |
tttatatattattttaatgttaatgtgcagcatgctcaaaacgcttgagaggtatcagaaatgcaactatggagcacctgaggctaatgctcactcaaag |
38398212 |
T |
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| Q |
101 |
gaagctttggtattggtgatacatctaactttgcctaatttgatcacagcaatttgtatttgtttttgtttaggtttagcttgttgaattataaaacaat |
200 |
Q |
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| T |
38398213 |
gaagctttggtattggtgatacatctaactttgcctaatttgatcacagcaatttgtgtttgtttttgtttaggtttagcttgttgaattataaaacaat |
38398312 |
T |
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| Q |
201 |
tttgccattgacaaatgttaattgatagttgttaatttgttggttaagagagtcaaactcatgtcgtcttcatc |
274 |
Q |
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| T |
38398313 |
tttg--aatggaaaatgttaattgatagttgttaatttgttggttaagagagtcaaactcatgtcgtcttcatc |
38398384 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 34828679 - 34828616
Alignment:
| Q |
26 |
tgcagcatgctcaaaacgcttgagaggtatcagaaatgcaattatggagcacctgaggctaatg |
89 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| ||||| || |||||| |||||| |
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| T |
34828679 |
tgcagcatgctgaaaacgctagagaggtatcagaaatgcaactatggtgcgcctgagactaatg |
34828616 |
T |
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