View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_43 (Length: 281)
Name: NF11780_high_43
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
| Q |
121 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc |
216 |
Q |
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| T |
21832402 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc |
21832497 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 21832285 - 21832347
Alignment:
| Q |
3 |
agtgtggagaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt |
65 |
Q |
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| T |
21832285 |
agtgtggagaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt |
21832347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 21832797 - 21832835
Alignment:
| Q |
222 |
caaacccgtaacaataaaaacataacctaactccaaacc |
260 |
Q |
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| T |
21832797 |
caaacccgtaacaataaaaacataacctaactccaaacc |
21832835 |
T |
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