View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_high_47 (Length: 263)

Name: NF11780_high_47
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_high_47
NF11780_high_47
[»] chr1 (2 HSPs)
chr1 (17-250)||(26137937-26138170)
chr1 (17-191)||(28125617-28125795)
[»] chr6 (8 HSPs)
chr6 (65-250)||(26825825-26826011)
chr6 (17-91)||(26637718-26637792)
chr6 (17-91)||(26743684-26743758)
chr6 (207-250)||(26657981-26658024)
chr6 (207-250)||(26763952-26763995)
chr6 (17-102)||(26648633-26648718)
chr6 (17-102)||(26754601-26754686)
chr6 (17-102)||(27609044-27609129)
[»] chr2 (1 HSPs)
chr2 (36-91)||(17991162-17991217)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 26138170 - 26137937
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaaaaagtaaataaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26138170 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaaaaagtaaataaaaa 26138071  T
Q  117 tcaaacatcataatctcatagttaatttataaacataccaaattggaaaatgtgcttatttcactcgccttgttcnnnnnnntagacgagagagacttcg 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  26138070 tcaaacatcataatctcatagttaatttataaatataccaaattggaaaatgtgcttatttcactcgccttgttcaaaaaaatagacgagagagacttcg 26137971  T
Q  217 aaggacatctattccatttcaataatctcaaact 250  Q
    ||||||||||||||||||||||||||||||||||    
T  26137970 aaggacatctattccatttcaataatctcaaact 26137937  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 28125617 - 28125795
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagaca-aaaggaaaaagtaaata--- 112  Q
    ||||||||||||| ||  |||||||||| ||||  ||| ||  |||| |||||||||| |||||||||||||||| ||| |||| | |||  |||||       
T  28125617 gagacatcgggtatatgggttaaatattcacaaaagttcaaagtcaagactttcatattctcgaacttctgcataaacacaaagaagaaacaaaatattc 28125716  T
Q  113 aaaatcaaacatcataatctcatagttaatttataaacataccaaattggaaaatgtgcttatttcactcgccttgttc 191  Q
    ||||| |||||  ||||||| ||||| |||| ||||| ||||  |||| |||||||  ||||||||||| |||||||||    
T  28125717 aaaataaaacacaataatctaatagtgaattcataaatatacacaatttgaaaatgaacttatttcacttgccttgttc 28125795  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 26826011 - 26825825
Alignment:
Q  65 actttcatatactcgaacttctgcatagacaaaaggaaaaagtaaa-taaaaatcaaacatcataatctcatagttaatttataaacataccaaattgga 163  Q
    |||||||||| |||||||||||||||| ||| || ||||||  ||| ||||||| |||||  |||||||  |||| |||||||||| ||||  |||||||    
T  26826011 actttcatattctcgaacttctgcataaacacaaagaaaaaacaaactaaaaataaaacacaataatctagtagtgaatttataaatatacacaattgga 26825912  T
Q  164 aaatgtgcttatttcactcgccttgttcnnnnnnntagacgagagagacttcgaaggacatctattccatttcaataatctcaaact 250  Q
    |||||  ||||||||||| |||||||||       |||| || ||||| | ||||||| | |||| ||||||||||| |||||||||    
T  26825911 aaatgaacttatttcacttgccttgttcaaaatactagatgatagagaatccgaaggatacctatcccatttcaatactctcaaact 26825825  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26637792 - 26637718
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcata 91  Q
    ||||||||||||| || ||||||||| ||||||| ||| ||  |||| ||||||||||| | |||||||||||||    
T  26637792 gagacatcgggtatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcata 26637718  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 26743758 - 26743684
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcata 91  Q
    ||||||||||||| || ||||||||| ||||||| ||| ||  |||| ||||||||||| | |||||||||||||    
T  26743758 gagacatcgggtatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcata 26743684  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 26658024 - 26657981
Alignment:
Q  207 agagacttcgaaggacatctattccatttcaataatctcaaact 250  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  26658024 agagacttcgaaggacatcctttccatttcaaaaatctcaaact 26657981  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 26763995 - 26763952
Alignment:
Q  207 agagacttcgaaggacatctattccatttcaataatctcaaact 250  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  26763995 agagacttcgaaggacatcctttccatttcaaaaatctcaaact 26763952  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26648718 - 26648633
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaa 102  Q
    |||||||| |||| || ||||||||||| ||||  ||| ||  |||| |||||||||| || ||||||||||||| ||| ||||||    
T  26648718 gagacatcaggtatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaa 26648633  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 26754686 - 26754601
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaa 102  Q
    |||||||| |||| || ||||||||||| ||||  ||| ||  |||| |||||||||| || ||||||||||||| ||| ||||||    
T  26754686 gagacatcaggtatatgagttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaaggaa 26754601  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 27609044 - 27609129
Alignment:
Q  17 gagacatcgggtagatcagttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcatagacaaaaggaa 102  Q
    ||||||||||||| ||  |||||||||| ||||| ||| ||  |||| |||||||||| ||  |||||||||||| ||| ||||||    
T  27609044 gagacatcgggtatatgtgttaaatattcacaatagttcaatgtcaagactttcatattctgaaacttctgcatacacacaaggaa 27609129  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 17991162 - 17991217
Alignment:
Q  36 ttaaatattgacaatcgttaaagctcaaaactttcatatactcgaacttctgcata 91  Q
    ||||||||||||||  ||||||  |||| |||||||||| ||||||||||||||||    
T  17991162 ttaaatattgacaacggttaaatgtcaagactttcatattctcgaacttctgcata 17991217  T

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