View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_high_49 (Length: 256)

Name: NF11780_high_49
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_high_49
NF11780_high_49
[»] chr4 (3 HSPs)
chr4 (1-197)||(50074108-50074304)
chr4 (196-245)||(50074853-50074902)
chr4 (196-245)||(50068834-50068883)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 50074108 - 50074304
Alignment:
Q  1 atgatctacggaggttagataaactagggcaagaaaatgttgcttaaatatgttattttatactaatatgatcatcataaacatttgcctgcatacaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50074108 atgatctacggaggttagataaactagggcaagaaaatgttgcttaaatatgttattttatactaatatgatcatcataaacatttgcgtgcatacaatt 50074207  T
Q  101 tccttnnnnnnntaagattgcatatgcatacagagattgttttatataaatactaattcnnnnnnnaaaggattcaaatttgcatgcatacaaagat 197  Q
    |||||       ||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  50074208 tccttaaaaaaataagattgcatatgcatacggagattgttttatataaatactaattctttttttaaaggattcaaatttgcatgcatacaaagat 50074304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 50074853 - 50074902
Alignment:
Q  196 ataagttttataaaattactttacttaaatatgaatttcaacttcatctc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50074853 ataagttttataaaattactttacttaaatatgaatttcaacttcatctc 50074902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 50068834 - 50068883
Alignment:
Q  196 ataagttttataaaattactttacttaaatatgaatttcaacttcatctc 245  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  50068834 ataaattttataaaattactttacttaaatatgactttcaacttcatctc 50068883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University