View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_50 (Length: 256)
Name: NF11780_high_50
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 29709839 - 29709650
Alignment:
| Q |
11 |
cagagaagcgaaaaacctcacctcatcatccaagtatttcagatcacgcatactgtataattccagnnnnnnnagagattgtagtttaccaaatgacgga |
110 |
Q |
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| T |
29709839 |
cagaaaagcgaaaaacctcacctcatcatccaagtatttcagattacgcatactgtataattccagtttttttagagatagtagtttaccaaatgaagga |
29709740 |
T |
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| Q |
111 |
aggcgcacacaattcttgcaatctttaagttcaagagc-aactaaattactaagaatacttattcaaattagtatgagaatgataaatta |
199 |
Q |
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| T |
29709739 |
aggcgcacacaattcttgcaatctttaagttcaagagcaaactaaattactaagaatacttattcaacttagtatgagaatgataaatta |
29709650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 30205782 - 30205868
Alignment:
| Q |
86 |
agattgtagtttaccaaatgacggaaggcgcacacaattcttgcaatctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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| T |
30205782 |
agattgtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttat |
30205868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 17419005 - 17418917
Alignment:
| Q |
84 |
agagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaatctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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| T |
17419005 |
agagattgtagtttaccaaatgacgaaagccgcacacagttctcacaattactaagtgcaacattaactaaattactaagaatacttat |
17418917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 29871402 - 29871541
Alignment:
| Q |
33 |
tcatcatccaagtatttcagatcacgcatactgtataattccagnnnnnnnagagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaat |
132 |
Q |
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|||||||||||||||||||||| | |||| |||||||||| |||||| |||||||||||| | ||||||| |||||| || ||||||| |
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| T |
29871402 |
tcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgcaat |
29871501 |
T |
|
| Q |
133 |
ctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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| T |
29871502 |
cctcaagtttaagagaaattaaattactaagaataattat |
29871541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 30435089 - 30435177
Alignment:
| Q |
84 |
agagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaatctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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| T |
30435089 |
agagatggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaataattat |
30435177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 30714270 - 30714182
Alignment:
| Q |
84 |
agagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaatctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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| T |
30714270 |
agagatggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaataattat |
30714182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 30399281 - 30399420
Alignment:
| Q |
33 |
tcatcatccaagtatttcagatcacgcatactgtataattccagnnnnnnnagagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaat |
132 |
Q |
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|||||||||||||||||||||| | |||| |||||||||| ||||| |||||||||||| | || |||| |||||| |||||||||| |
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| T |
30399281 |
tcatcatccaagtatttcagattatccatatcagataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgcaat |
30399380 |
T |
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| Q |
133 |
ctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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| T |
30399381 |
tcccaagttcaagagaaactaaattactaagaataattat |
30399420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 30678004 - 30677916
Alignment:
| Q |
84 |
agagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaatctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
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|||||| ||||||||||| | ||||||| |||||| || ||||| || | ||||||||||| || |||||||||||||||| |||| |
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| T |
30678004 |
agagatggtagtttaccacgtaacggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataattat |
30677916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 30748910 - 30748998
Alignment:
| Q |
84 |
agagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaatctttaagttcaagagcaactaaattactaagaatacttat |
172 |
Q |
| |
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|||||| |||||||||||| | ||||||| |||||| || |||||| | ||||||||||| || |||||||||||||||| |||| |
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| T |
30748910 |
agagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaataattat |
30748998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 26706548 - 26706686
Alignment:
| Q |
33 |
tcatcatccaagtatttcagatcacgcatactgtataattccagnnnnnnnagagattgtagtttaccaaatgacggaaggcgcacacaattcttgcaat |
132 |
Q |
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|||||||||||||||||||||| | |||| |||||||||| |||||| |||||||||||| | ||||||| |||||| | |||||||||| |
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| T |
26706548 |
tcatcatccaagtatttcagattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaat |
26706647 |
T |
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| Q |
133 |
ctttaagttcaagagcaactaaattactaagaatactta |
171 |
Q |
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| T |
26706648 |
ccccaagttcaagagaaactaaattactaagaatactta |
26706686 |
T |
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