View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11780_high_8 (Length: 636)
Name: NF11780_high_8
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_8 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Complemental strand, 4710865 - 4710231
Alignment:
| Q |
1 |
agccttaagacacaagctgcagattagcagccacattcaatcttgaaattaatctcaaccgataatatgattcgaatctatttggtaaaaaatgttgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710865 |
agccttaagacacaagctgcagattagcagccacattcaatcttgaaattaatctcaaccgataatatgattcgaatctatttggtaaaaaatgttgatt |
4710766 |
T |
|
| Q |
101 |
ccggtcatgattcattatttgaatcacctaagatttttcgtttaatatgggaactattaccacttctgatactgaggtctctgcacttaagaaaaaaggg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
4710765 |
ccagtcatgattcattatttgaatcacctaagatttttcgtttaatatgggaactattaccacttctgatactgaggtctctgtacttaaaaaaaaaggg |
4710666 |
T |
|
| Q |
201 |
aagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattattacaacactgatagttcaaggtcgagatattgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710665 |
aagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattattacaacactgatagttcaaggtcgagatattgat |
4710566 |
T |
|
| Q |
301 |
gaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||| | |
|
|
| T |
4710565 |
gaccaacaaattaatgtaacctgtgaagtacaacaattattaggaaataattgaattagagctgtaa-cta--tgagtgccagaaatgctcttaagaggg |
4710469 |
T |
|
| Q |
401 |
gaatgcatgtgattgacacgggagctcttctaagtattctatccaggggagcaaccctagatggaattttcattatgcttggagggcctattaataatct |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4710468 |
gaatgcatgtgattgacacgggagctcctctaagtattctatccaggggagcaaccctagatggaattttcattatgcttggaggacctattaataatct |
4710369 |
T |
|
| Q |
501 |
aggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttatacatttggat--aaaattattcatttacgaaattagagtgtgc |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
4710368 |
aggtcttgtagatacttgcacaacatctctttttcatagatccgcgcatgcctttatacatttggatacaaaattattcatttacgaaattagagtgccc |
4710269 |
T |
|
| Q |
599 |
atctatactggcataacactcctatataaaccaaaaag |
636 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4710268 |
atctatactggcatcacactcctatataaaccaaaaag |
4710231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 158 - 560
Target Start/End: Complemental strand, 12340316 - 12339909
Alignment:
| Q |
158 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
252 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| ||| |||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
12340316 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
12340217 |
T |
|
| Q |
253 |
aagatgcttattatt-acaacact--gatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
349 |
Q |
| |
|
||||||| || |||| ||||| || |||||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
12340216 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
12340117 |
T |
|
| Q |
350 |
atcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatccagggg |
449 |
Q |
| |
|
|| || |||||||||| | || | ||||| | | ||| ||| |||||||||||| ||||||| |||||||||||| |||||| ||| | | | || |
|
|
| T |
12340116 |
atagagttagagctgt-agcta--tgagtgctacagatggtctaaagagaggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcgg |
12340020 |
T |
|
| Q |
450 |
agcaaccctagatggaattttcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcat |
549 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| | |
|
|
| T |
12340019 |
agcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcct |
12339920 |
T |
|
| Q |
550 |
gcctttataca |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
12339919 |
gcctttataca |
12339909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 158 - 560
Target Start/End: Complemental strand, 48939095 - 48938688
Alignment:
| Q |
158 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
252 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| ||| |||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
48939095 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
48938996 |
T |
|
| Q |
253 |
aagatgcttattatt-acaacact--gatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
349 |
Q |
| |
|
||||||| || |||| ||||| || |||||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
48938995 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
48938896 |
T |
|
| Q |
350 |
atcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatccagggg |
449 |
Q |
| |
|
|| || |||||||||| | || | ||||| | | ||| ||| |||||||||||| ||||||| |||||||||||| |||||| ||| | | | || |
|
|
| T |
48938895 |
atagagttagagctgt-agcta--tgagtgctacagatggtctaaagagaggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcgg |
48938799 |
T |
|
| Q |
450 |
agcaaccctagatggaattttcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcat |
549 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| | |
|
|
| T |
48938798 |
agcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcct |
48938699 |
T |
|
| Q |
550 |
gcctttataca |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
48938698 |
gcctttataca |
48938688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 158 - 560
Target Start/End: Original strand, 6948605 - 6949012
Alignment:
| Q |
158 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
252 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| ||| |||||||| ||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
6948605 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggttcggtactcgatgtagtttttccaccaggg |
6948704 |
T |
|
| Q |
253 |
aagatgcttattatt-acaacact--gatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
349 |
Q |
| |
|
||||||| || |||| ||||| || |||||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
6948705 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
6948804 |
T |
|
| Q |
350 |
atcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatccagggg |
449 |
Q |
| |
|
|| || |||||||||| | || | ||||| | | ||| ||| |||||||||||| ||||||| |||||||||||| |||||| ||| | | | || |
|
|
| T |
6948805 |
atagagttagagctgt-agcta--tgagtgctacagatggtctaaagagaggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcgg |
6948901 |
T |
|
| Q |
450 |
agcaaccctagatggaattttcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcat |
549 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| | |
|
|
| T |
6948902 |
agcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcct |
6949001 |
T |
|
| Q |
550 |
gcctttataca |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
6949002 |
gcctttataca |
6949012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 158 - 560
Target Start/End: Complemental strand, 12336130 - 12335723
Alignment:
| Q |
158 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
252 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| ||| |||||||| |||||||||||| | || ||| ||||||||| |||| || |
|
|
| T |
12336130 |
taccacttcagatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccgatactcgatatagtttttccactaggg |
12336031 |
T |
|
| Q |
253 |
aagatgcttattatt-acaacact--gatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
349 |
Q |
| |
|
||||||| || |||| ||||| || |||||||||||||| ||||| || || |||| ||||||||||||| ||||||| ||| ||| |||||||||||| |
|
|
| T |
12336030 |
aagatgcctaatatttacaacgctctgatagttcaaggtcaagatactgttggccaagaaattaatgtaacttgtgaagtacagcaaatattaggaaata |
12335931 |
T |
|
| Q |
350 |
atcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatccagggg |
449 |
Q |
| |
|
|| || |||||||||| | || | ||||| | ||| ||| |||||||||||| |||||||| ||||||||| || |||||| ||| | | || |
|
|
| T |
12335930 |
atagagttagagctgt-agcta--tgagtgctaccgatggtctaaagagaggaatggatgtgattaacacgggagttcccctaagtgttccagttggcgg |
12335834 |
T |
|
| Q |
450 |
agcaaccctagatggaattttcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcat |
549 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||||| |||| | ||||||||||||| | | |
|
|
| T |
12335833 |
agcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatttaggtactgtagatactggcacaacctctcctattcatagatctgcacgt |
12335734 |
T |
|
| Q |
550 |
gcctttataca |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
12335733 |
gcctttataca |
12335723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 203 - 366
Target Start/End: Original strand, 26158823 - 26158989
Alignment:
| Q |
203 |
gtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattatt-acaacact--gatagttcaaggtcgagatattga |
299 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||||||||| || | ||||||||| || |||| ||||| || |||||||||||||||||||| || |
|
|
| T |
26158823 |
gtatcacgcaaataattggtccggtactcgatgtagtttttccaccagggaagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgt |
26158922 |
T |
|
| Q |
300 |
tgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgta |
366 |
Q |
| |
|
|| ||| ||||||| ||||| ||||||| |||||||||||||||||||||| || |||||| |||| |
|
|
| T |
26158923 |
tggtcaagaaattaacgtaacttgtgaagtacaacaattattaggaaataatagagttagagttgta |
26158989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 203 - 560
Target Start/End: Original strand, 19679083 - 19679440
Alignment:
| Q |
203 |
gtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattatt-acaacact--gatagttcaaggtcgagatattga |
299 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||||||||| || | ||||||||| || |||| ||||| || |||||||||||||||||||| || |
|
|
| T |
19679083 |
gtatcacgcaaataattggtccggtacttgatgtagtttttccaccagggaagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgt |
19679182 |
T |
|
| Q |
300 |
tgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagaga |
399 |
Q |
| |
|
|| |||| ||||||| ||||| ||||||| |||||||||||||||||||||| || |||||||||| | || | ||||| | | ||| ||| |||||| |
|
|
| T |
19679183 |
tggccaagaaattaacgtaacttgtgaagtacaacaattattaggaaataatagagttagagctgt-agcta--tgagtgctacagatggtctaaagaga |
19679279 |
T |
|
| Q |
400 |
ggaatgcatgtgattgacacgggagctcttctaagtattctatccaggggagcaaccctagatggaattttcattatgcttggagggcctattaataatc |
499 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||| ||| | | | ||||||||||||| | ||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
19679280 |
ggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcggagcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatt |
19679379 |
T |
|
| Q |
500 |
taggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
560 |
Q |
| |
|
|||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
19679380 |
taggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
19679440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 158 - 560
Target Start/End: Complemental strand, 18189484 - 18189077
Alignment:
| Q |
158 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
252 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| ||| |||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
18189484 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
18189385 |
T |
|
| Q |
253 |
aagatgcttattatt-acaacact--gatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
349 |
Q |
| |
|
||||||| || |||| ||||| || |||||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
18189384 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
18189285 |
T |
|
| Q |
350 |
atcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatccagggg |
449 |
Q |
| |
|
|| || |||||||||| | || | ||||| | | ||| ||| |||||||||||| ||||||| |||||||||||| |||||| ||| | | | || |
|
|
| T |
18189284 |
atagagttagagctgt-agcta--tgagtgctacagatggtctaaagagaggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcgg |
18189188 |
T |
|
| Q |
450 |
agcaaccctagatggaattttcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcat |
549 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| | |
|
|
| T |
18189187 |
agcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcct |
18189088 |
T |
|
| Q |
550 |
gcctttataca |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
18189087 |
gcctttataca |
18189077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 203 - 560
Target Start/End: Complemental strand, 2550233 - 2549876
Alignment:
| Q |
203 |
gtatcacgtaaataattggtctggtatatgatgtagtttttcaactaaggaagatgcttattatt-acaacact--gatagttcaaggtcgagatattga |
299 |
Q |
| |
|
|||||| | |||||||||||| |||| ||||||||||||| || | ||||||||| || |||| ||||| || |||||||||||||||||||| || |
|
|
| T |
2550233 |
gtatcatgcaaataattggtccggtactcgatgtagtttttccaccagggaagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgt |
2550134 |
T |
|
| Q |
300 |
tgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagaga |
399 |
Q |
| |
|
|| |||| ||||||| ||||| ||||||| ||| |||||||||||||||||| || |||||||||| | || | ||||| | | ||| ||| |||||| |
|
|
| T |
2550133 |
tggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaataatagagttagagctgt-agcta--tgagtgctacagatggtctaaagaga |
2550037 |
T |
|
| Q |
400 |
ggaatgcatgtgattgacacgggagctcttctaagtattctatccaggggagcaaccctagatggaattttcattatgcttggagggcctattaataatc |
499 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||| ||| | | | ||||||||||||| | ||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
2550036 |
ggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcggagcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatt |
2549937 |
T |
|
| Q |
500 |
taggtcttgtagatacttgcacaacatctctttttcatagatctgcgcatgcctttataca |
560 |
Q |
| |
|
|||||| |||||||||| | ||||| |||| | |||||||||| |||| |||||||||||| |
|
|
| T |
2549936 |
taggtcctgtagatactgggacaacctctcctattcatagatccgcgcctgcctttataca |
2549876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 158 - 560
Target Start/End: Original strand, 13239445 - 13239852
Alignment:
| Q |
158 |
taccacttctgatactgaggtctctgcacttaagaaaaaag-----ggaagtatcacgtaaataattggtctggtatatgatgtagtttttcaactaagg |
252 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| | |||||| ||| |||||||| |||||||||||| |||| ||||||||||||| || | || |
|
|
| T |
13239445 |
taccacttcggatactgaggtttctggacttgaaaaaaaaaatataggacgtatcacgcaaataattggtccggtactcgatgtagtttttccaccaggg |
13239544 |
T |
|
| Q |
253 |
aagatgcttattatt-acaacact--gatagttcaaggtcgagatattgatgaccaacaaattaatgtaacctgtgaagcacaacaattattaggaaata |
349 |
Q |
| |
|
||||||| || |||| ||||| || |||||||||||||||||||| || || |||| ||||||| ||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
13239545 |
aagatgcctaatatttacaacgctctgatagttcaaggtcgagatactgttggccaagaaattaacgtaacttgtgaagtacagcaattattaggaaata |
13239644 |
T |
|
| Q |
350 |
atcgaattagagctgtaatgtaactaagtgccagaaatgctcttaagagaggaatgcatgtgattgacacgggagctcttctaagtattctatccagggg |
449 |
Q |
| |
|
|| || |||||||||| | || | ||||| | | ||| ||| |||||||||||| ||||||| |||||||||||| |||||| ||| | | | || |
|
|
| T |
13239645 |
atagagttagagctgt-agcta--tcagtgctacagatggtctaaagagaggaatggttgtgattaacacgggagctcccctaagtgttccagtcggcgg |
13239741 |
T |
|
| Q |
450 |
agcaaccctagatggaattttcattatgcttggagggcctattaataatctaggtcttgtagatacttgcacaacatctctttttcatagatctgcgcat |
549 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||| ||||| |||||| |||||||||| | ||||| |||| | |||||||||| |||| | |
|
|
| T |
13239742 |
agcaaccctaggtcgaattttcaacgtgcttggagagcctattgataatttaggtcctgtagatactgggacaacctctcctattcatagatccgcgcct |
13239841 |
T |
|
| Q |
550 |
gcctttataca |
560 |
Q |
| |
|
||||||||||| |
|
|
| T |
13239842 |
gcctttataca |
13239852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 253645 - 253586
Alignment:
| Q |
307 |
caaattaatgtaacctgtgaagcacaacaattattaggaaataatcgaattagagctgta |
366 |
Q |
| |
|
||||||||||| || ||||| | |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
253645 |
caaattaatgtgacttgtgaggtacaacaattattaggaaataatagagttagagctgta |
253586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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