View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_high_9 (Length: 622)
Name: NF11780_high_9
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Complemental strand, 21371855 - 21371259
Alignment:
| Q |
8 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21371855 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacatagtactc |
21371756 |
T |
|
| Q |
108 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371755 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
21371656 |
T |
|
| Q |
208 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgtggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371655 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgcggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
21371556 |
T |
|
| Q |
308 |
aaccgaagcgactccggcgttaccaacgtcggactttgtgaggttaaggttgtcccggatgatcgggactaaaggtgctgccgcgaatgtcgatacgaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21371555 |
aaccgaagcgactccggcgttaccaacgtcggattttgtgaggttaaggttgtcccggatgatcgggactaaaggtgctgccgcgaatgtcgagacgaaa |
21371456 |
T |
|
| Q |
408 |
caggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttcgatttgtgttcagaatcaactg |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21371455 |
caggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttggatttgtgttcagaatcaactg |
21371356 |
T |
|
| Q |
508 |
gtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagct |
604 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371355 |
gtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagct |
21371259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Original strand, 21385702 - 21386298
Alignment:
| Q |
8 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
21385702 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacatagtactc |
21385801 |
T |
|
| Q |
108 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21385802 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
21385901 |
T |
|
| Q |
208 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgtggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385902 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgcggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
21386001 |
T |
|
| Q |
308 |
aaccgaagcgactccggcgttaccaacgtcggactttgtgaggttaaggttgtcccggatgatcgggactaaaggtgctgccgcgaatgtcgatacgaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
21386002 |
aaccgaagcgactccggcgttaccaacgtcggattttgtgaggttaaggttgtcccggatgatcgggactaaaggtgctgccgcgaatgtcgagacgaaa |
21386101 |
T |
|
| Q |
408 |
caggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttcgatttgtgttcagaatcaactg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
21386102 |
caggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttgaaaactttggatttgtgttcagaatcaactg |
21386201 |
T |
|
| Q |
508 |
gtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagct |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386202 |
gtaatgcaaatttggctgtggtatcagttggtaccattggtgaagcaactgatgacatgaaggtttgttctcttccagttactccatgcatggagct |
21386298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 48674164 - 48674302
Alignment:
| Q |
42 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaag |
141 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||| ||||||||||||||| | |||||||| |||||||||| |
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| T |
48674164 |
atattaccccaaccagcagcagtcccattaacaagtccaataatcttcctattaaacat---actcatccaatattggtaagaaacaaaagttgccaaag |
48674260 |
T |
|
| Q |
142 |
agaaaccaatcataaacctaactgctatataaccagcagcat |
183 |
Q |
| |
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||||||||||||| ||||||||||||||| | |||| ||||| |
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| T |
48674261 |
agaaaccaatcatgaacctaactgctatacatccagaagcat |
48674302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 36199965 - 36199810
Alignment:
| Q |
90 |
ctattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcat-tttca |
188 |
Q |
| |
|
||||||||| | ||||| ||| |||||| || |||||||| ||||| ||||| ||||||||||| ||||||||| ||||||| |||| ||||| |||| |
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|
| T |
36199965 |
ctattaaacgtcttactcgtccgatattggcaagaaacaaaagttgctaaagacaaaccaatcatgaacctaactactatatatccagaagcatcattca |
36199866 |
T |
|
| Q |
189 |
acaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccata |
247 |
Q |
| |
|
|||||| ||||||||| ||||||| || | |||||||||||| || ||||||||||| |
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|
| T |
36199865 |
--aaatgaaatacaaaac-ctgttggagcagatagcattataagtaaagcacaaccata |
36199810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 691421 - 691479
Alignment:
| Q |
42 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacat |
100 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||| || | ||||||||| |
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|
| T |
691421 |
atattaccccaaccagcagcagtcccattgacaagtccaataatcttccaattaaacat |
691479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 693213 - 693271
Alignment:
| Q |
42 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacat |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||| | ||||||||||| |
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|
| T |
693213 |
atattaccccgaccagcagcagtcccattaacaagtccaacaatcctcctattaaacat |
693271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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