View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_1 (Length: 922)

Name: NF11780_low_1
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_1
NF11780_low_1
[»] chr2 (6 HSPs)
chr2 (1-821)||(18031190-18032006)
chr2 (326-391)||(19803804-19803869)
chr2 (326-391)||(19812334-19812399)
chr2 (871-911)||(18031100-18031140)
chr2 (398-449)||(32445932-32445983)
chr2 (5-94)||(19804086-19804175)
[»] chr7 (3 HSPs)
chr7 (398-626)||(22002043-22002269)
chr7 (746-815)||(22002453-22002522)
chr7 (326-391)||(25753615-25753680)
[»] chr6 (8 HSPs)
chr6 (1-177)||(32878649-32878823)
chr6 (69-166)||(1068802-1068898)
chr6 (445-641)||(33364301-33364496)
chr6 (1-327)||(2612835-2613164)
chr6 (721-817)||(33364663-33364759)
chr6 (609-644)||(22208490-22208525)
chr6 (602-644)||(16592721-16592763)
chr6 (592-642)||(33164133-33164183)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-168)||(71346-71513)
scaffold0026 (1-327)||(73387-73713)
[»] chr4 (5 HSPs)
chr4 (646-809)||(55156474-55156642)
chr4 (326-391)||(48087172-48087237)
chr4 (114-177)||(18274399-18274462)
chr4 (326-391)||(13898037-13898102)
chr4 (329-389)||(18274600-18274660)
[»] chr3 (10 HSPs)
chr3 (647-821)||(29642020-29642198)
chr3 (326-391)||(1730991-1731056)
chr3 (326-391)||(11985128-11985193)
chr3 (65-131)||(12126643-12126708)
chr3 (27-161)||(1731206-1731337)
chr3 (727-777)||(4803977-4804027)
chr3 (294-327)||(12126859-12126892)
chr3 (730-777)||(10535703-10535750)
chr3 (326-369)||(12126874-12126917)
chr3 (610-644)||(48101527-48101561)
[»] chr5 (7 HSPs)
chr5 (1-177)||(28361105-28361279)
chr5 (326-391)||(28361415-28361480)
chr5 (326-391)||(27273050-27273115)
chr5 (326-376)||(26284359-26284409)
chr5 (333-391)||(40579271-40579329)
chr5 (205-291)||(16547706-16547790)
chr5 (13-94)||(40578966-40579047)
[»] scaffold0009 (3 HSPs)
scaffold0009 (1-177)||(224955-225129)
scaffold0009 (326-391)||(224756-224821)
scaffold0009 (730-777)||(89640-89687)
[»] chr8 (4 HSPs)
chr8 (1-177)||(21178159-21178334)
chr8 (415-641)||(32309041-32309266)
chr8 (721-817)||(32309433-32309529)
chr8 (326-391)||(21177957-21178022)
[»] scaffold0205 (2 HSPs)
scaffold0205 (1-177)||(3233-3408)
scaffold0205 (326-393)||(3497-3564)
[»] chr1 (12 HSPs)
chr1 (445-641)||(30330394-30330589)
chr1 (99-179)||(51058485-51058565)
chr1 (721-817)||(30330131-30330227)
chr1 (326-391)||(27774278-27774343)
chr1 (330-389)||(25606984-25607042)
chr1 (13-94)||(25607263-25607344)
chr1 (730-777)||(25626139-25626186)
chr1 (610-644)||(9934245-9934279)
chr1 (592-642)||(24208117-24208167)
chr1 (592-642)||(45027897-45027947)
chr1 (592-642)||(45032745-45032795)
chr1 (5-94)||(27774560-27774649)
[»] scaffold0158 (1 HSPs)
scaffold0158 (326-391)||(11676-11741)
[»] scaffold1752 (1 HSPs)
scaffold1752 (326-376)||(824-874)


Alignment Details
Target: chr2 (Bit Score: 686; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 1 - 821
Target Start/End: Complemental strand, 18032006 - 18031190
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18032006 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagcgagttacacgtcaaaaaattccgacaacgtattgcgaaagcaaaacggtg 18031907  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacggaaacccgtcgtttatgtctcta 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031906 tctcttattcaatattttctacaaaagttttatttttctcgttactatttaataagcgcaaaattactcgagtgacggaaacccgtcgtttatgtctcta 18031807  T
Q  201 cccgtcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaagaacaagaa 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031806 cccgtcatatatttaattaaaaccaatatttattttacgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaagaacaagaa 18031707  T
Q  301 gcggtacttgttaaattggtctctgtgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcggtctgttaag 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   || |||||||||||||| |||    
T  18031706 gcggtacttgttaaattggtctctgtgttaaattggtctttgtggatacaatactttttatactaaaaccgacatagttgtacacttgcggtctgtcaag 18031607  T
Q  401 acacttatatcctatatgattggagggttaacctaagaagacatatggtgttaaccttggttggagtttatttctactagtggaagggatgaatggaaaa 500  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18031606 acacttatatcctatatgattggaggggtaacctaagaagacatatggtgttgaccttggttggagtttatttctactagtggaagggatgaatggaaaa 18031507  T
Q  501 cagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaata 600  Q
    ||||||||||  ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||     ||||||||||||    
T  18031506 cagagacaccagaagactttaagttgagaataggagggacgtttttggtaaaaaaattgtatttggtgtttgaagagctaatt-----gttggaagaata 18031412  T
Q  601 attaacaaataagtagccatatgaagagcatgatgccaaaatgatgtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttacattatga 700  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||    
T  18031411 attaacaaataagtagtcatatgaagagcatgatgtcaaaaagatgtgaggtgtggggacaagaaaattggaagctcattccattatatttacattatga 18031312  T
Q  701 aaagaa-tattgtcatattgttttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 799  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18031311 aaagaagtattgtcatattcttttctgttatcacattgaaaacattttatatctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtgg 18031212  T
Q  800 aataagcttgagatttatgtgc 821  Q
    ||||||||||||||||||||||    
T  18031211 aataagcttgagatttatgtgc 18031190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 19803869 - 19803804
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  19803869 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 19803804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 19812399 - 19812334
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  19812399 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 19812334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 871 - 911
Target Start/End: Complemental strand, 18031140 - 18031100
Alignment:
Q  871 gagtaacgatgaccaccaggaccaagagttgctgatgtcca 911  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  18031140 gagtaacgatgaccaccatgaccaagagttgttgatgtcca 18031100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 32445983 - 32445932
Alignment:
Q  398 aagacacttatatcctatatgattggagggttaacctaagaagacatatggt 449  Q
    |||||||||||||||| ||| ||| ||||| ||||||||||||||| |||||    
T  32445983 aagacacttatatcctctataatttgaggggtaacctaagaagacacatggt 32445932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 19804175 - 19804086
Alignment:
Q  5 agaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 94  Q
    |||||| ||||||| || ||| |||| ||||| ||| ||||| || | |||||  |||  |||||||||||||||| |||||||||||||    
T  19804175 agaaaaaagaatttttaggcctgtaactatacgctatgaaagtagggggttacgtgtctaaaaattccgacaacgtgttgcgaaagcaaa 19804086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 398 - 626
Target Start/End: Original strand, 22002043 - 22002269
Alignment:
Q  398 aagacacttatatcctatatgattggagggttaacctaagaagacatatggtgttaaccttggttggagtttatttctactagtggaagggatgaatgga 497  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||  |||||| |||||||||| |||||||||||| ||||||||||||| ||||||    
T  22002043 aagacacttatatcctcaatgattggagggataacctaagaagacat--ggtgttgaccttggttgcagtttatttctagtagtggaagggattaatgga 22002140  T
Q  498 aaacagagacacccaaagactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgt-ttggttggaag 596  Q
    |||||||||||||| | ||||||||| ||||||| ||| ||| || ||| | |||  ||| ||| |||| |||| |||||||| || | |||||||||||    
T  22002141 aaacagagacacccgatgactttaagatgagaatagga-ggaaatattttgataaggaatcgtagttggggttttaagagctacttatgttggttggaag 22002239  T
Q  597 aataattaacaaataagtagccatatgaag 626  Q
    |||| ||||||||||||| | |||||||||    
T  22002240 aatatttaacaaataagtggtcatatgaag 22002269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 746 - 815
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  746 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 815  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 25753615 - 25753680
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  25753615 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 25753680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 32878823 - 32878649
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||  || ||||||| ||||  |||||||||||||||| ||||||||||||| |||||    
T  32878823 attaagaaaaaagaatttttaagcctgtaattatacactacgaaat-agggagttacgcgtctaaaaattccgacaacgtgttgcgaaagcaaa-cggtg 32878726  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 177  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||  |||||||||||||    
T  32878725 tctcttgttcaatattttctgcaaaagttttatttttctcgttactatttaattagcacaaagctactcgagtgacg 32878649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 1068802 - 1068898
Alignment:
Q  69 ttccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaatta 166  Q
    |||||||||||||||||||||||||  |  |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  1068802 ttccgacaacgtattgcgaaagcaat-caatgtctcttattcaatattttttacaaaagttttatttttctcgttactatttaattagcgcaaaatta 1068898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 445 - 641
Target Start/End: Original strand, 33364301 - 33364496
Alignment:
Q  445 atggtgttaaccttggttggagtttatttctactagtggaagggatgaatggaaaacagagacacccaaagactttaagttgagaattggagggacattt 544  Q
    |||||||| | |||| ||| |||||||||||  |||||||||||||||  |||||||| ||||| |||||||||||||| ||||| | ||| ||| ||||    
T  33364301 atggtgttgatcttgcttgaagtttatttcttgtagtggaagggatgaggggaaaacatagacaaccaaagactttaagatgagagtaggatggagattt 33364400  T
Q  545 ttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaa 641  Q
    |||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  |||| | |||||||||||| ||||| || |||||||||||    
T  33364401 ttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgtttaagagataagtagccatttgaagtgcgtgatgccaaaa 33364496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2612835 - 2613164
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    |||||||||||||||||| |||||   ||| |||| |||||| |||||| ||||||  ||||  ||||| | |||||||||||| |||||| ||||   |    
T  2612835 attaagaaaagagaatttttaagcttataactatatactacggaagcagggagttatgcgtctaaaaatcctgacaacgtattgtgaaagc-aaacaaag 2612933  T
Q  101 tctcttattcaata-ttttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg---------gaaacccgtcgtt 190  Q
    |||||| || |||| ||||||||||||||||||||||| | ||    ||| ||| |||||||| ||||| ||||||||         | || || || ||    
T  2612934 tctcttgtttaatatttttctacaaaagttttatttttttcgtattaattaaattagcgcaaagttacttgagtgacgaaggtcgacggaaaccatcatt 2613033  T
Q  191 tatgtctctacccgtcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaaca 290  Q
    |  ||||||||||||| ||||||||||||||| |||||||||||||| || | ||| | |  | ||||||||||  | ||  |||||||||| |||        
T  2613034 ttggtctctacccgtcttatatttaattaaaatcaatatttattttacgcacgaaatcaaaatattttgaatttttccttagataaacataggaac---- 2613129  T
Q  291 agaacaagaagcggtacttgttaaattggtctctgtg 327  Q
      |||||||||||||||||||||||||||||| ||||    
T  2613130 --aacaagaagcggtacttgttaaattggtctatgtg 2613164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 721 - 817
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  721 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 817  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 644
Target Start/End: Original strand, 22208490 - 22208525
Alignment:
Q  609 ataagtagccatatgaagagcatgatgccaaaatga 644  Q
    |||||||||||| |||||||||||||||||||||||    
T  22208490 ataagtagccatttgaagagcatgatgccaaaatga 22208525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 602 - 644
Target Start/End: Complemental strand, 16592763 - 16592721
Alignment:
Q  602 ttaacaaataagtagccatatgaagagcatgatgccaaaatga 644  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  16592763 ttaacatataagttgccatgtgaagagcatgatgccaaaatga 16592721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 33164183 - 33164133
Alignment:
Q  592 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 642  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 33164133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 71346 - 71513
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    |||||||||||||||||| |||||  |||| ||||||||||||||| || ||||||| |  |  | ||||| |||||||||||||||||||||| |||||    
T  71346 attaagaaaagagaatttttaagcttgtaaatatacactacgaaagtagcgagttacgcacctaataattctgacaacgtattgcgaaagcaaa-cggtg 71444  T
Q  101 tctcttattcaatattttctacaaaagttttatt-tttcttgttactatttaataagcgcaaaattact 168  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  71445 tctcttgttcaatattttctacaaaagttttattgtttctcgttactatttaattagcgcaaaattact 71513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 73387 - 73713
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    |||||||||||||||||| |||||  |||| ||||||||||||||| ||    ||||  | |  ||||||| |||||||||||||||||||||| ||  |    
T  73387 attaagaaaagagaatttctaagcttgtaactatacactacgaaag-agaattttacgtgcctaaaaattctgacaacgtattgcgaaagcaaa-cgacg 73484  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagt----------gacggaaacccgtcgtt 190  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||| | || ||| ||||  ||||          |||||||| || |||||    
T  73485 tctcttgttcaatattttctgcaaaagttttatttttctcgttactatttaattaacgtaaagttacgtgagtggcgaaggtcgacggaaa-ccatcgtt 73583  T
Q  191 tatgtctctacccgtcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaaca 290  Q
    |  |||||| |||||||||||||||||||||| |||||||||||||| ||  | || |||  |||||||||||| || ||  ||||||||||||||        
T  73584 ttggtctcttcccgtcatatatttaattaaaatcaatatttattttacgc-atgaaaccaaatgttttgaattttgctttagataaacatagaaac---- 73678  T
Q  291 agaacaagaagcggtacttgttaaattggtctctgtg 327  Q
      ||||||||||| |||||||||||||||||||||||    
T  73679 --aacaagaagcgatacttgttaaattggtctctgtg 73713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 646 - 809
Target Start/End: Complemental strand, 55156642 - 55156474
Alignment:
Q  646 gtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaa 740  Q
    |||||||||| | ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| ||||||    
T  55156642 gtgaggtgtgaggacaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaa 55156543  T
Q  741 acattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 809  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156542 acattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 48087172 - 48087237
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  48087172 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 48087237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 18274399 - 18274462
Alignment:
Q  114 attttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 177  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||  ||||||||    
T  18274399 attttctacaaaagttttatctttcttgttactatttaattagcgcaaagttacatgagtgacg 18274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 13898102 - 13898037
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| | ||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  13898102 tgttaatttggtctctatggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 13898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 18274600 - 18274660
Alignment:
Q  329 taaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgc 389  Q
    ||||||||||| | ||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  18274600 taaattggtctctatggatacgatactttttatactaaaaccgacatagccgtgcacttgc 18274660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 8e-39; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 647 - 821
Target Start/End: Complemental strand, 29642198 - 29642020
Alignment:
Q  647 tgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaa 741  Q
    ||||||||| | |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| |||||||    
T  29642198 tgaggtgtgaggacaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaa 29642100  T
Q  742 cattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 821  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642099 cattgtatatctcttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 1731056 - 1730991
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  1731056 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 1730991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 11985128 - 11985193
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| || |||||||||||    
T  11985128 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccatgcacttgcgg 11985193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 12126643 - 12126708
Alignment:
Q  65 aaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagtttt 131  Q
    |||| ||||||||| |||||||||||||||  |||||||||| ||||||||||||| ||||||||||    
T  12126643 aaaaatccgacaacctattgcgaaagcaaat-ggtgtctcttgttcaatattttctgcaaaagtttt 12126708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 1731337 - 1731206
Alignment:
Q  27 gtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaa 126  Q
    |||||||||| ||||||||| || | |||||| |||  | | |||||||||||| |||||||||| ||||  |||||||| ||| ||| |||||||  ||    
T  1731337 gtaattatacgctacgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagc-aaacattgtctcttgttcgataatttctac--aa 1731241  T
Q  127 gttttatttttcttgttactatttaataagcgcaa 161  Q
    |||||| || ||| ||||| ||||||| |||||||    
T  1731240 gttttaattctctcgttaccatttaattagcgcaa 1731206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 777
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  727 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 777  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 12126859 - 12126892
Alignment:
Q  294 acaagaagcggtacttgttaaattggtctctgtg 327  Q
    ||||||||||||||||||||||||||||||||||    
T  12126859 acaagaagcggtacttgttaaattggtctctgtg 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 777
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  730 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 777  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 12126874 - 12126917
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaac 369  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||    
T  12126874 tgttaaattggtctctgtggatacgatactttttatactaaaac 12126917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 644
Target Start/End: Original strand, 48101527 - 48101561
Alignment:
Q  610 taagtagccatatgaagagcatgatgccaaaatga 644  Q
    ||||||||||| |||||||||||||||||||||||    
T  48101527 taagtagccatttgaagagcatgatgccaaaatga 48101561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 3e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 28361105 - 28361279
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||| || |||||||  | |  ||| ||| ||||||||||||| |||||||| ||  |    
T  28361105 attaagaaaag-gaatttttaagcctgtaattatacactacgaaagtagggagttacgtgcctaaaatttctgacaacgtattgcaaaagcaaa-cgcag 28361202  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 177  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||  ||||||||    
T  28361203 tctcttgttcaatattttctacaaaagttttatctttctcgttactatttaattagcgcaaagttacgtgagtgacg 28361279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 28361415 - 28361480
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||||||||||| || |||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  28361415 tgttaaattggtctctgaggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 28361480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 27273050 - 27273115
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    ||||||||||| || ||||||||| |||| ||||||||| |||||||||||  |||||||||||||    
T  27273050 tgttaaattggcctctgtggatacgataccttttatactaaaaccgacatagtcgtgcacttgcgg 27273115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 26284409 - 26284359
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacata 376  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||| ||||    
T  26284409 tgttaaattggtctatgtggatacaatattttttatactaaaaccgtcata 26284359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 40579271 - 40579329
Alignment:
Q  333 ttggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    ||||||| ||| ||||| |||||||||||||| |||| |||||| ||||||||||||||    
T  40579271 ttggtctctgtagatacgatactttttatactaaaactgacatagccgtgcacttgcgg 40579329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 16547790 - 16547706
Alignment:
Q  205 tcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaa 291  Q
    |||||||||||||||||| |||||||  |||||||||| |||||||  | |||||||||| ||  |  || ||||||||||||||||    
T  16547790 tcatatatttaattaaaatcaatatt--ttttatgcgcgaaacccaactattttgaattttgccctagatgaacatagaaacaacaa 16547706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 40578966 - 40579047
Alignment:
Q  13 gaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 94  Q
    |||||| || ||| |||||||||| ||||||||| ||   ||||| ||||  ||||||||||||| || |||||||||||||    
T  40578966 gaatttttaggcctgtaattatacgctacgaaagtaggttgttacgcgtctaaaaattccgacaatgtgttgcgaaagcaaa 40579047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 225129 - 224955
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    ||||||||||| || ||| |||||  ||||||||||| |||||||| || ||||||| | |   ||||||||||||  |||||| |||||||||  ||||    
T  225129 attaagaaaagggattttttaagcatgtaattatacaatacgaaagtagggagttacgcttttaaaaattccgacat-gtattgtgaaagcaaat-ggtg 225032  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 177  Q
    |||||| ||||| |||||||||||| |||| |||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  225031 tctcttgttcaaaattttctacaaacgtttaatttttctcgttgctatttaattagcgcaaagttactcgagtgacg 224955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 224821 - 224756
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||| | |||| |||||||||    
T  224821 tgttaaattggtctctgtggatacgatactttttatactaaaaccgacacagccgtacacttgcgg 224756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 777
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  730 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 777  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 21178334 - 21178159
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    |||||||||||  ||||| |||||| |||||||||||||||||||| || |||||||| | |  ||| ||| ||||||||||||||||||| | | |       
T  21178334 attaagaaaaggaaatttttaagcctgtaattatacactacgaaagtagggagttacatgcctaaaatttctgacaacgtattgcgaaagc-ataggcaa 21178236  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 177  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||||||||||||| || ||||| ||||  ||||||||    
T  21178235 tctcttgttcaatatattctacaaaagttttatctttctcgttactatttaattagtgcaaagttacgtgagtgacg 21178159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 415 - 641
Target Start/End: Original strand, 32309041 - 32309266
Alignment:
Q  415 tatgattggagggttaacctaagaagacatatggtgttaaccttggttggagtttatttctactagtggaagggatgaatggaaaacagagacacccaaa 514  Q
    ||||||| || || || ||||| || ||| |||||||| | |||| ||| |||||||||||  |||||||||||||||  |||||||| ||||| |||||    
T  32309041 tatgattagatggatatcctaaaaatacacatggtgttgatcttgcttgaagtttatttcttgtagtggaagggatgaggggaaaacatagacatccaaa 32309140  T
Q  515 gactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataagt 614  Q
    ||||||||| ||||| | ||| ||| |||||||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  |||| | ||||||    
T  32309141 gactttaagatgagagtaggatggagatttttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgtttaagagataagt 32309239  T
Q  615 agccatatgaagagcatgatgccaaaa 641  Q
    |||||| ||||| || |||||||||||    
T  32309240 agccatttgaagtgcgtgatgccaaaa 32309266  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 721 - 817
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  721 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 817  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 21178022 - 21177957
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||||  |||||||||||||    
T  21178022 tgttaaattggtctctgaggatacaatactttttatactaaaaccgacatagtcgtgcacttgcgg 21177957  T

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Target: scaffold0205 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 3233 - 3408
Alignment:
Q  1 attaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtg 100  Q
    |||||||||||  ||||| |||||| |||||||||||||||||||| || |||||||  | |  ||| ||| |||||||||||||||||||||| ||       
T  3233 attaagaaaaggaaatttttaagcctgtaattatacactacgaaagtagggagttacgtgcctaaaatttctgacaacgtattgcgaaagcaaa-cgcaa 3331  T
Q  101 tctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 177  Q
    ||| || |||  ||||||||||||| ||||||| ||||| ||||||||||||| |||||||| ||||  ||||||||    
T  3332 tcttttcttccttattttctacaaatgttttatctttctcgttactatttaattagcgcaaagttacgtgagtgacg 3408  T

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Target: scaffold0205; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 326 - 393
Target Start/End: Original strand, 3497 - 3564
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcggtc 393  Q
    |||||||||||||| || ||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  3497 tgttaaattggtctctgaggatacaatactttttatactaaaaccgacatagtagtgcacttgcggtc 3564  T

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Target: chr1 (Bit Score: 61; Significance: 1e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 445 - 641
Target Start/End: Complemental strand, 30330589 - 30330394
Alignment:
Q  445 atggtgttaaccttggttggagtttatttctactagtggaagggatgaatggaaaacagagacacccaaagactttaagttgagaattggagggacattt 544  Q
    |||||||| | |||| ||| |||||||||||  |||||||||||||||  |||||||| ||||| |||||||||||||| ||||| | ||| ||| ||||    
T  30330589 atggtgttgatcttgcttgaagtttatttcttgtagtggaagggatgaggggaaaacatagacagccaaagactttaagatgagagtaggatggagattt 30330490  T
Q  545 ttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaa 641  Q
    |||| || | ||||||  |||||||||||||||||| ||  ||||| || || ||  |||| | |||||||||||| ||||| || |||||||||||    
T  30330489 ttgg-tagagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgtttaagagataagtagccatttgaagtgcgtgatgccaaaa 30330394  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 51058565 - 51058485
Alignment:
Q  99 tgtctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacgga 179  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||    
T  51058565 tgtcacttgttcaatattttctacaaaagttttatttctcttgttactatttaattagcacaaaattactcgagtggcgga 51058485  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 721 - 817
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  721 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 817  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 27774343 - 27774278
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  27774343 tgttaatttggtctctgtggatacgatactttttatactaaaaccgacatagccgtgcacttgcgg 27774278  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 25607042 - 25606984
Alignment:
Q  330 aaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgc 389  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||| |||| |||||||    
T  25607042 aaattggtctt-gtggatacgatactttttatactaaaaccgacatagccgtacacttgc 25606984  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 25607344 - 25607263
Alignment:
Q  13 gaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 94  Q
    |||||| || ||| |||||||||| ||||||||| ||   ||||| ||||  |||||||||||||||| |||||||||||||    
T  25607344 gaatttttaggcctgtaattatacgctacgaaagtaggttgttacgcgtctaaaaattccgacaacgtgttgcgaaagcaaa 25607263  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 777
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  730 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 777  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 610 - 644
Target Start/End: Original strand, 9934245 - 9934279
Alignment:
Q  610 taagtagccatatgaagagcatgatgccaaaatga 644  Q
    ||||||||||| |||||||||||||||||||||||    
T  9934245 taagtagccatttgaagagcatgatgccaaaatga 9934279  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 24208167 - 24208117
Alignment:
Q  592 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 642  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 24208117  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 45027947 - 45027897
Alignment:
Q  592 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 642  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45027897  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 642
Target Start/End: Complemental strand, 45032795 - 45032745
Alignment:
Q  592 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 642  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45032745  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 27774649 - 27774560
Alignment:
Q  5 agaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 94  Q
    |||||| ||||||| || ||| |||| ||||| ||| ||||| || | |||||  |||  |||||||||||||||| |||||||||||||    
T  27774649 agaaaaaagaatttttaggcctgtaactatacgctatgaaagtagggggttacgtgtctaaaaattccgacaacgtgttgcgaaagcaaa 27774560  T

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Target: scaffold0158 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 391
Target Start/End: Original strand, 11676 - 11741
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacataaccgtgcacttgcgg 391  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||| ||||||| ||||||||||||||    
T  11676 tgttaatttggtctctgtggatacgatactttttatactaaaatcgacatagccgtgcacttgcgg 11741  T

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Target: scaffold1752 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1752
Description:

Target: scaffold1752; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 874 - 824
Alignment:
Q  326 tgttaaattggtctttgtggatacaatactttttatactgaaaccgacata 376  Q
    |||||| ||||||| ||| ||||| |||||||||||||| |||||||||||    
T  874 tgttaatttggtctctgtagatacgatactttttatactaaaaccgacata 824  T

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