View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_12 (Length: 614)
Name: NF11780_low_12
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 35 - 598
Target Start/End: Original strand, 24921972 - 24922508
Alignment:
| Q |
35 |
ggtgagctgatgtctcttccattccactgcaaaaaacacaattcaccgctgcatccgcattcaacacttgtctgaactcggaaccacttgtattgatcgc |
134 |
Q |
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| T |
24921972 |
ggtgagttgatgtctcttccattccaccgcaaaaaacacaattcaccgctgcatccgcattcaacacttgtctgaacg-------acttgtaatgattgc |
24922064 |
T |
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| Q |
135 |
aagtgtattgcttggaaaggaagatcggttgtatcataagtgaattttgataggatcatgaataattttgcagctcagtagtccaaaaatcggctagaaa |
234 |
Q |
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| T |
24922065 |
aagtgtatggctgggaaaggaaggttggttgtatcataagtgaattttgataggatcgtgaataattttgcagctcagtagtccaaaaatcggctagaaa |
24922164 |
T |
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| Q |
235 |
atgacttggagtatgaatgtgattggcaaatgatgtgtttaaaatgagaagcatattgaaaatattttgcttatttgtttctcctcccatcagtaccatt |
334 |
Q |
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| T |
24922165 |
atgacttggagtatgaatgtgattggcaagtgatgtgtttaaaatgagaagcatattaaaaatattttgcttatttgtttctcctcctatcagtaccatt |
24922264 |
T |
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| Q |
335 |
gtaggatttgtataactgaatacaccaaagatgacatgttgatattacattaaattgagtatgaaatcggatagtttggattagaatatgcaaaagttat |
434 |
Q |
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| T |
24922265 |
gtaggatttgtataactgaatacaccaaagatg----------------ttaaattgagtatgaaatcggatagtttggattagaatatgcaaaagttaa |
24922348 |
T |
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| Q |
435 |
agcaagtcatatggacaactcatcaccaccataggattacaaatgcattactttagtttgtttgttacttccataaataggatacatgtaactaacttgg |
534 |
Q |
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| T |
24922349 |
agcaagtcatatggacaactcatcaccaccataggattacaaatgcattacttta----gtttgttacttccataaataggatacatgtaactaacttgg |
24922444 |
T |
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| Q |
535 |
aactagatcaattcattcaatagatccattttctctttgttcttgttctcataataatactaac |
598 |
Q |
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| T |
24922445 |
aactagatcaattcattcaatagattcattttctctttgttcttgttctcataataatactaac |
24922508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 161 - 382
Target Start/End: Complemental strand, 271875 - 271655
Alignment:
| Q |
161 |
ggttgtatcataagtgaattttgataggatcatgaataattttgcagctcagtagtccaaaaatcggctagaaaatgacttggag----tatgaatgtga |
256 |
Q |
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| T |
271875 |
ggttgcatcctaactgaatgttgataggatcatgaa-agttgtgcaattcagtactccaaaaatcaactagaaaatgactaggagctattatgaatgtca |
271777 |
T |
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| Q |
257 |
ttggcaaatgatgtgtttaaaatgagaagcatattgaaaatattttgcttatttgtttctcctcccatcagtaccattgtaggatttgtataactgaata |
356 |
Q |
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| T |
271776 |
ttggcaagtgatgtatttgaaatgagaagcatcttgttaatgttt-gcatagttgtttctcct---atcagtaccattgtaggatttgtatcattcaaaa |
271681 |
T |
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| Q |
357 |
caccaaagatgacatgttgatattac |
382 |
Q |
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| T |
271680 |
caccaaaaatgacatggtgatattac |
271655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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