View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_13 (Length: 601)
Name: NF11780_low_13
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Original strand, 38275192 - 38275758
Alignment:
| Q |
11 |
cacagacaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275192 |
cacacacaaacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaa |
38275291 |
T |
|
| Q |
111 |
agcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275292 |
agcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaa |
38275391 |
T |
|
| Q |
211 |
ggggggaaaatgcataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggagagcct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275392 |
ggggggaaaatgcataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggagagcct |
38275491 |
T |
|
| Q |
311 |
ttggcgataaataagaaattgaatattctgcaatgtgatcacaggtttcacatataaaagaccccatacaagtgcagatgcagatcttgaagtaatttta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38275492 |
ttggcgataaataagaaattgaatattctgcaatgtgatcacaggtttcacatataaaagaccccatacaag------tgcagatcttgaagtaatttta |
38275585 |
T |
|
| Q |
411 |
tccctttctcatcacagtaacgctgaaaaagttcccttgtatcttgcagtgccttcgacttgaaaaacatacggtgtgaagattaatactaacaaagttt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275586 |
tccctttctcatcacagtaacgctgaaaaagttcccttgtatcttgcagtgccttcgacttgaaaaacatacggtgtgaagattaatactaacaaagttt |
38275685 |
T |
|
| Q |
511 |
tgtttacattaaaagagttaaaaggtaatattactgcaggaaatttcgttcaagtaaaggaaatggcagcaaaat |
585 |
Q |
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| T |
38275686 |
tgtttacattaaaagagttaaaaggtaatattactgcaggaaatttcgttcaa--aaaggaaatggcagcaaaat |
38275758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
69 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
168 |
Q |
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||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |||||| |||| |||||||||||||||||||| | |||||||||| |
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| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
|
| Q |
169 |
ttaccga |
175 |
Q |
| |
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||||||| |
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| T |
36870549 |
ttaccga |
36870555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 585
Target Start/End: Original strand, 32235839 - 32235880
Alignment:
| Q |
544 |
ctgcaggaaatttcgttcaagtaaaggaaatggcagcaaaat |
585 |
Q |
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| T |
32235839 |
ctgcaggaaatttcgttagagtaaagaaaatggcagcaaaat |
32235880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 8964798 - 8964863
Alignment:
| Q |
399 |
gaagtaattttatccctttctcatcacagtaacgctgaaaaagttcccttgtatcttgcagtgcct |
464 |
Q |
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| T |
8964798 |
gaagtaatttcatccttttctcatcagagtaacactgaaaaagttcctttgtctcttgcggtgcct |
8964863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 37962416 - 37962355
Alignment:
| Q |
229 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttag |
290 |
Q |
| |
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||||| |||||||||| |||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
37962416 |
aattaaaaggataaggtaaaactcaccagctagcaattagagttatcaatccaacaatttag |
37962355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 20455 - 20392
Alignment:
| Q |
229 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
292 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
20455 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
20392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 16430473 - 16430410
Alignment:
| Q |
229 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
292 |
Q |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
16430473 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
16430410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 585
Target Start/End: Original strand, 39917081 - 39917122
Alignment:
| Q |
544 |
ctgcaggaaatttcgttcaagtaaaggaaatggcagcaaaat |
585 |
Q |
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||||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
39917081 |
ctgcaggaaatttcgttcaagcaaaggaaatgacagtaaaat |
39917122 |
T |
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