View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_16 (Length: 555)
Name: NF11780_low_16
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 4 - 538
Target Start/End: Original strand, 47625461 - 47625995
Alignment:
| Q |
4 |
agagcaacatagccaggcatgcataaaagtctatttttagttagtcagtggcattgttgatgaataataatacaaatgatgatctttggttctctctgta |
103 |
Q |
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| T |
47625461 |
agagcaacatagccaggcatgcataaaagtctatttttagttagtcagtggcattgttgatgaataataatacaaatgatgatctttggttctctctgta |
47625560 |
T |
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| Q |
104 |
ataaattttaagacnnnnnnnntatgttgataaaaaaggcaaagagaatagaagataagttaa-tttatatgataacttcctaaatctgagactccattt |
202 |
Q |
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| T |
47625561 |
ataaattttaagacaaaaaaa-tattttgataaaaaaggcaaagagaatagaagataagttaaatttatatgataacttcctaaatctgagactccattt |
47625659 |
T |
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| Q |
203 |
tcggtcatcttaatggctcatagtggacacgatgtttccacagatatgcaataatgcaaagctatcagacagctagaaataggcaagggtcaagcataag |
302 |
Q |
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| T |
47625660 |
tcggtcatcttaatggctcatagtggacacgatgtttccgcagatatgcaataatgcaaagctatcagacagctagaaataggcaagggtcaagcataag |
47625759 |
T |
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| Q |
303 |
ctcgaattctatttcaatatgaggatttatccccaaatttgtgtatcagaatgctgatttcatgataagccagttaacttggtaagaaaacacattaaaa |
402 |
Q |
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| T |
47625760 |
ctcgaattctatttcaatatgaggatttatccccaaatttgtgtatcagaatgctgatttcatgataagccagttaacttggtaagaaaacacattaaaa |
47625859 |
T |
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| Q |
403 |
acggcccataggaaaatcattataccaataaaaactattagaaagatgaagtttttctatctattttgtttaaaaaacgtgtatgacccagtataagaac |
502 |
Q |
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| T |
47625860 |
acggcccataggaaaatcattataccaataaaaactattagaaagatgaagtttttctatctattttgtttaaaaaacgtgtatgacccagtataagaac |
47625959 |
T |
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| Q |
503 |
aaccacttcataagttcttaaagaaagtaaacaagt |
538 |
Q |
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| T |
47625960 |
aaccacttcataagttcttaaagaaagtaaacaagt |
47625995 |
T |
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