View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_17 (Length: 531)

Name: NF11780_low_17
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_17
NF11780_low_17
[»] chr6 (8 HSPs)
chr6 (1-511)||(20237799-20238309)
chr6 (1-511)||(22131783-22132293)
chr6 (5-510)||(20085890-20086395)
chr6 (6-511)||(22204770-22205272)
chr6 (6-421)||(24385070-24385484)
chr6 (5-418)||(20205210-20205623)
chr6 (5-418)||(22099233-22099646)
chr6 (81-418)||(21971847-21972187)
[»] scaffold0074 (2 HSPs)
scaffold0074 (6-326)||(47781-48098)
scaffold0074 (384-418)||(47689-47723)
[»] scaffold0264 (2 HSPs)
scaffold0264 (6-295)||(15841-16129)
scaffold0264 (384-415)||(16218-16249)
[»] scaffold0007 (1 HSPs)
scaffold0007 (6-326)||(5302-5625)


Alignment Details
Target: chr6 (Bit Score: 511; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 20237799 - 20238309
Alignment:
Q  1 gattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20237799 gattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaata 20237898  T
Q  101 agagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20237899 agagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgt 20237998  T
Q  201 tttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20237999 tttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatata 20238098  T
Q  301 aatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20238099 aatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgca 20238198  T
Q  401 ctgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20238199 ctgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctct 20238298  T
Q  501 gcagttttatt 511  Q
    |||||||||||    
T  20238299 gcagttttatt 20238309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 22131783 - 22132293
Alignment:
Q  1 gattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22131783 gattaggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaata 22131882  T
Q  101 agagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22131883 agagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgt 22131982  T
Q  201 tttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22131983 tttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatata 22132082  T
Q  301 aatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22132083 aatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgca 22132182  T
Q  401 ctgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22132183 ctgagctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctct 22132282  T
Q  501 gcagttttatt 511  Q
    |||||||||||    
T  22132283 gcagttttatt 22132293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 5 - 510
Target Start/End: Original strand, 20085890 - 20086395
Alignment:
Q  5 aggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagag 104  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||  ||| ||  |||||||||||||||||| |||| |||||||    
T  20085890 aggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaacagtataaaatttttcgccatttgtggcgttggaggacagataagag 20085989  T
Q  105 agaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttg 204  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||  |||||||||| ||||    
T  20085990 agaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttg 20086089  T
Q  205 aatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatt 304  Q
    ||| ||||||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||||  |||||||||| |||||| |||||| | | |      
T  20086090 aatgatttgtttgaggaacaagctcatttggcgaaggagcattaatagacctataaaaaggatataattcatacctaacattacagctaggaaaaagaac 20086189  T
Q  305 tctcccaccctgctttccatcatacaca-tttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactg 403  Q
    ||||||||||  |||||||||| | |||  | | |||||||  |||||||| |  ||| |||||||||||||||  |   |||||||| |||||||||||    
T  20086190 tctcccacccacctttccatcaca-acagctaggaagtttctcaatagcactattgagacaggttctgcaatcaccgggtgacaagtccggcgtgcactg 20086288  T
Q  404 agctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgca 503  Q
    ||||||||||||||| || |||||||||||||||  |  |||| | |||||||||||| |||  ||||||  |||||||||||| ||||||| |||||||    
T  20086289 agctagacagtaaagggtctgagattcagaaatccttgcttcttttgtggcaaacttcttgttgttgtcagtagtaagtggacctgctgcttcctctgca 20086388  T
Q  504 gttttat 510  Q
    |||||||    
T  20086389 gttttat 20086395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 6 - 511
Target Start/End: Complemental strand, 22205272 - 22204770
Alignment:
Q  6 ggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagaga 105  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||  |  | |||||  ||  |||||||||||||||||| |||||||||||||    
T  22205272 ggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttccgccatttgtggcgttggaggacaaataagaga 22205173  T
Q  106 gaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttga 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| |||  ||||||||||  ||||    
T  22205172 gaagtaatttgaagtttttgttagtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaatctagaatcttgggttga 22205073  T
Q  206 atcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaattt 305  Q
    || ||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||| | | |  |    
T  22205072 atgatttgtttgaggaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaact 22204973  T
Q  306 ctcccaccctgctttccatcatacaca-tttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactga 404  Q
    ||| |||||  |||||||||| | |||  | | ||||| |  |||||||| |   || |||||||||||||||  |   |||||||| ||||||||||||    
T  22204972 ctcgcacccacctttccatcaca-acagctaggaagttcctcaatagcactattaagacaggttctgcaatcaccgggtgacaagtccggcgtgcactga 22204874  T
Q  405 gctagacagtaaagcgtttgagattcagaaatctgtttttctatcgtggcaaacttcgtgtccttgtcaccagtaagtggacccgctgctttctctgcag 504  Q
    ||||| |||||||| || |||||||||||||||| |  |||| | |||||||| ||| ||   |||||| ||||||||||||| ||||||| ||||||||    
T  22204873 gctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttg---ttgtcagcagtaagtggacctgctgcttcctctgcag 22204777  T
Q  505 ttttatt 511  Q
    |||||||    
T  22204776 ttttatt 22204770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 6 - 421
Target Start/End: Complemental strand, 24385484 - 24385070
Alignment:
Q  6 ggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagaga 105  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||  || ||| |||| || ||||||||||||||||||| |||| ||||||||    
T  24385484 ggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttacagtatagaattttttgccatttgtggcgttggaggacagataagaga 24385385  T
Q  106 gaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttga 205  Q
    |||||||||||||||| | ||| |||||| || |||||||||||| |||||||| ||||||||||| ||||||||||| |||  ||||||||||||||||    
T  24385384 gaagtaatttgaagttatcgtttgtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga 24385285  T
Q  206 atcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaattt 305  Q
    ||||||||||||||||||||||||||||  |||||||||| || ||||| ||||||||||| |||| ||||||||||| ||||| |||||| |   |  |    
T  24385284 atcatttgtttgaggaacaagctcatttgatgaaggagcaataatagatttataaaaaggaaatagttcatacctaatgttacagctaggaaaaggaact 24385185  T
Q  306 ctcccaccctgctttccatca-tacacatttgaa-agtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactg 403  Q
    || ||||||||||||||||||  ||| | | ||| || |||  |||||||| |  ||| |||||||||||||||||    ||||||||||||||||||||    
T  24385184 ct-ccaccctgctttccatcacaacatagtggaagagattc--aatagcactattgagacaggttctgcaatcattaggggacaagtctggcgtgcactg 24385088  T
Q  404 agctagacagtaaagcgt 421  Q
    ||||| | ||||||||||    
T  24385087 agctaaatagtaaagcgt 24385070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 20205210 - 20205623
Alignment:
Q  5 aggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagag 104  Q
    |||||| ||||||||||||| |||||| || |||||  ||||||||||||||    |||| ||| || ||||  | |||||||| ||  ||||||||||     
T  20205210 aggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagac 20205309  T
Q  105 agaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttg 204  Q
    ||||||||||||| |||||||| |||||||||  |||||||||||| |||||||| ||||||||||| ||  |||| || ||  |||||||||||||| |    
T  20205310 agaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgg 20205409  T
Q  205 aatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatt 304  Q
    ||||||||||| ||||| | ||||||||| ||||| || || || |||| |||||||| |||||||  |||||||| | |||||| |||||||| | |      
T  20205410 aatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaa 20205509  T
Q  305 tctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactga 404  Q
    |||||| |||  |||||||||| |    ||||||| ||||  |||||||| || ||| |||||||||||||||||   |||||| || ||||||||||||    
T  20205510 tctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactga 20205609  T
Q  405 gctagacagtaaag 418  Q
    ||||||||||||||    
T  20205610 gctagacagtaaag 20205623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 22099233 - 22099646
Alignment:
Q  5 aggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagag 104  Q
    |||||| ||||||||||||| |||||| || |||||  ||||||||||||||    |||| ||| || ||||  | |||||||| ||  ||||||||||     
T  22099233 aggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagac 22099332  T
Q  105 agaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttg 204  Q
    ||||||||||||| |||||||| |||||||||  |||||||||||| |||||||| ||||||||||| ||  |||| || ||  |||||||||||||| |    
T  22099333 agaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgg 22099432  T
Q  205 aatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatt 304  Q
    ||||||||||| ||||| | ||||||||| ||||| || || || |||| |||||||| |||||||  |||||||| | |||||| |||||||| | |      
T  22099433 aatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaa 22099532  T
Q  305 tctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactga 404  Q
    |||||| |||  |||||||||| |    ||||||| ||||  |||||||| || ||| |||||||||||||||||   |||||| || ||||||||||||    
T  22099533 tctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatccggcgtgcactga 22099632  T
Q  405 gctagacagtaaag 418  Q
    ||||||||||||||    
T  22099633 gctagacagtaaag 22099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 81 - 418
Target Start/End: Original strand, 21971847 - 21972187
Alignment:
Q  81 gtggcgttggaagacaaataagagagaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatctt 180  Q
    |||||||| ||  |||||||||| ||||||| ||||| |||||||| |||||||||| |||  ||||||| |||||||| ||||||||||| ||||||||    
T  21971847 gtggcgttcgacaacaaataagacagaagtagtttgatgtttttgtcagtgattgtattgtaatttcttgagcaattataggaaagataaaatggatctt 21971946  T
Q  181 gtgtaaaa---ttagaatcttgttttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcata 277  Q
     || ||     |||||||||||| | |||||||||||||||||| ||||||||||| | ||| || ||| |||||| |||||||| |||||||  |||||    
T  21971947 ctgaaagtattttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcata 21972046  T
Q  278 cctaatattacaactaggatataaatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatca 377  Q
    ||||| |||||| |||||||| | |  |||||||||   ||||||| || |    | ||||||| ||  |||||||| |  ||| |||||||||||||||    
T  21972047 cctaacattacagctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatca 21972146  T
Q  378 ttgaacgacaagtctggcgtgcactgagctagacagtaaag 418  Q
    ||   |||||| ||  |||||||||||||||||| ||||||    
T  21972147 ttaggcgacaaatccagcgtgcactgagctagactgtaaag 21972187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 6 - 326
Target Start/End: Complemental strand, 48098 - 47781
Alignment:
Q  6 ggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagaga 105  Q
    ||||||||||||||||||| ||||||||| |||| | |||||||||||||| || ||||| || ||  |||||||||||||||||| |||||||||||||    
T  48098 ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 47999  T
Q  106 gaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttga 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||  ||||||||||||||||    
T  47998 gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga 47899  T
Q  206 atcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaattt 305  Q
    ||  |||||||||||||||||||||||| |||||| |   ||  |||| ||||||||||||||||| |||||||||| |||||| |||||| | |||       
T  47898 atgttttgtttgaggaacaagctcatttggtgaagta---ttgatagacctataaaaaggatatagttcatacctaacattacagctaggaaaaaaaacc 47802  T
Q  306 ctcccaccctgctttccatca 326  Q
     ||||||||||||||||||||    
T  47801 atcccaccctgctttccatca 47781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 47723 - 47689
Alignment:
Q  384 gacaagtctggcgtgcactgagctagacagtaaag 418  Q
    |||||||||||||||||||||||||||||||||||    
T  47723 gacaagtctggcgtgcactgagctagacagtaaag 47689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 15841 - 16129
Alignment:
Q  6 ggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagaga 105  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||  |  | |||||  || ||||| ||||||||||||| |||| ||||||||    
T  15841 ggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttctgcca-ttgtggcgttggaggacagataagaga 15939  T
Q  106 gaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttga 205  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||  |||||||||| |||||    
T  15940 gaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttga 16039  T
Q  206 atcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactagg 295  Q
    || ||||||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||||| |||||||||| |||||| |||||    
T  16040 atgatttgtttgaggaacaagctcatttggcgaaggagcattaatagacctataaaaaggatatagttcatacctaacattacagctagg 16129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 415
Target Start/End: Original strand, 16218 - 16249
Alignment:
Q  384 gacaagtctggcgtgcactgagctagacagta 415  Q
    ||||||||||||||||||||||||||||||||    
T  16218 gacaagtctggcgtgcactgagctagacagta 16249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 6 - 326
Target Start/End: Complemental strand, 5625 - 5302
Alignment:
Q  6 ggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagaga 105  Q
    ||||||||||||||||||| ||||||||| |||| | |||||||||||||| || ||||| || ||  |||||||||||||||||| |||||||||||||    
T  5625 ggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 5526  T
Q  106 gaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttga 205  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||  ||||||| || |||  ||| ||||||||||||    
T  5525 gaagtaatttgaagtttttcttagtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaatctagtatcttgttttga 5426  T
Q  206 atcatttgtttgaggaacaagctcatttagtgaaggagcattagt---agatctataaaaaggatatagctcatacctaatattacaactaggatataaa 302  Q
    ||  |||||||||||||||||||||||| |||||| || | || |   ||| ||||||||||||||||| ||||||||||||||||| |||||| | | |    
T  5425 atagtttgtttgaggaacaagctcatttggtgaagaagtagtattgatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaaca 5326  T
Q  303 tttctcccaccctgctttccatca 326  Q
      ||||||||||| ||||||||||    
T  5325 actctcccaccctcctttccatca 5302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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