View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_19 (Length: 520)

Name: NF11780_low_19
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_19
NF11780_low_19
[»] chr2 (2 HSPs)
chr2 (9-503)||(3674029-3674516)
chr2 (23-76)||(36602678-36602731)
[»] chr7 (3 HSPs)
chr7 (209-501)||(15745555-15745850)
chr7 (9-73)||(15745346-15745409)
chr7 (23-76)||(33982261-33982314)
[»] chr6 (3 HSPs)
chr6 (209-501)||(1570461-1570756)
chr6 (9-73)||(1570902-1570965)
chr6 (116-175)||(33138354-33138413)
[»] chr8 (2 HSPs)
chr8 (33-74)||(30001884-30001925)
chr8 (23-75)||(16786477-16786529)
[»] chr4 (2 HSPs)
chr4 (23-76)||(49646123-49646176)
chr4 (23-75)||(25687087-25687139)
[»] chr3 (1 HSPs)
chr3 (23-76)||(2229115-2229168)
[»] chr1 (1 HSPs)
chr1 (23-76)||(4638492-4638545)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 503
Target Start/End: Complemental strand, 3674516 - 3674029
Alignment:
Q  9 aatgatatgtcaaaagctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagctattgnnnnnnnnnngtgttttaagcttgtgaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            |||||||||||||||||    
T  3674516 aatgatatgtcaaaagctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagctagtgaaaaaaaaaaacgttttaagcttgtgaaa 3674417  T
Q  109 gaagacagttaccaaacaactctactttaaccatacaagcttatacgctagaagatagcggtttggccatgtcattaagagccataaaagaatgataa-- 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||      
T  3674416 gaagacagttaccaaacaactctactttaaccatacaagcttatacgca---------cggttcggccatgtcattaagagccataaaagaatgataata 3674326  T
Q  207 ctaatattatacaagcatttccgaagcaagttaaatatctcctggaactcgataatagagctatgtacttaaaagtagatagcaaacctgaattctactt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3674325 ctaatattatacaagcatttccgaagcaagttaaatatctcctggaactcgataatagagctatgaacttaaaagtagatagcaaacctgaattctactt 3674226  T
Q  307 tctgcattccaagtgctaagaccatgccttaaaagagtgactttctttgatgaagtgattaactcatttgttagtgatgttgttgcttttgtgaaatcat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3674225 tctgcattccaagtgctaagaccatgccttaaaagagtgactttctttgatgaagtgattaactcatttgttagtgatgttgttgcttttgtgaaatcat 3674126  T
Q  407 atgcaccaccagttacagaaaaatcaatactatttggaagtttgtctgcatgaaggcaccacaaaaccaacttgagcccatgttggagtaaatgtgt 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3674125 atgcaccaccagttacagaaaaatcaatactatttggaagtttgtctgcatgaagacaccacaaaaccaacttgagcccatgttggagtaaatgtgt 3674029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 36602678 - 36602731
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagcta 76  Q
    |||||| || |||||||||| ||||| ||| ||| |||||||||||||||||||    
T  36602678 agctataagctcaaatgctacttgaaatagtttatcaaaaaacgctataagcta 36602731  T

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Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 209 - 501
Target Start/End: Original strand, 15745555 - 15745850
Alignment:
Q  209 aatattatacaagcatttccgaagcaagttaaatatctcctggaactcgataatagagctatgtacttaaaagtagatagcaaa---cctgaattctact 305  Q
    ||||| |||||||||||||||| |||||||||||||||||  |||||| ||||||||||||   ||| ||||||||| ||||||   ||||||| | |||    
T  15745555 aatataatacaagcatttccgaggcaagttaaatatctccctgaactcaataatagagctaataactaaaaagtagagagcaaatcgcctgaatccaact 15745654  T
Q  306 ttctgcattccaagtgctaagaccatgccttaaaagagtgactttctttgatgaagtgattaactcatttgttagtgatgttgttgcttttgtgaaatca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15745655 ttctgcattccaagtgctaagaccatgccttaaaagagtgactttctttgatgaagtgattaactcatttgttagtgatgttgttgcttttgtgaaatca 15745754  T
Q  406 tatgcaccaccagttacagaaaaatcaatactatttggaagtttgtctgcatgaaggcaccacaaaaccaacttgagcccatgttggagtaaatgt 501  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| | ||| |||||||||||||||||||||    
T  15745755 tatgcaccaccagttacaggaaaatcaatactatttggaaggttgtctgcatgaagacaccacaaaacaaccttcagcccatgttggagtaaatgt 15745850  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 15745346 - 15745409
Alignment:
Q  9 aatgatatgtcaaaagctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataag 73  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  15745346 aatgatatgttaaaagctataagttcaaatgctaattgaagtagcttacc-aaaaacgctataag 15745409  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 33982261 - 33982314
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagcta 76  Q
    |||||| || ||||| |||| ||||| ||||||| |||||||||||||||||||    
T  33982261 agctataagctcaaaagctacttgaaatagcttatcaaaaaacgctataagcta 33982314  T

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Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 209 - 501
Target Start/End: Complemental strand, 1570756 - 1570461
Alignment:
Q  209 aatattatacaagcatttccgaagcaagttaaatatctcctggaactcgataatagagctatgtacttaaaagtagatagcaaa---cctgaattctact 305  Q
    ||||| |||||||||||||||| |||||||||||||||||  |||||| ||||||||||||   ||| ||||||||| ||||||   ||||||| | |||    
T  1570756 aatataatacaagcatttccgaggcaagttaaatatctccctgaactcaataatagagctaataactaaaaagtagagagcaaatcgcctgaatccaact 1570657  T
Q  306 ttctgcattccaagtgctaagaccatgccttaaaagagtgactttctttgatgaagtgattaactcatttgttagtgatgttgttgcttttgtgaaatca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1570656 ttctgcattccaagtgctaagaccatgccttaaaagagtgactttctttgatgaagtgattaactcatttgttagtgatgttgttgcttttgtgaaatca 1570557  T
Q  406 tatgcaccaccagttacagaaaaatcaatactatttggaagtttgtctgcatgaaggcaccacaaaaccaacttgagcccatgttggagtaaatgt 501  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| | ||| |||||||||||||||||||||    
T  1570556 tatgcaccaccagttacaggaaaatcaatactatttggaaggttgtctgcatgaagacaccacaaaacaaccttcagcccatgttggagtaaatgt 1570461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 1570965 - 1570902
Alignment:
Q  9 aatgatatgtcaaaagctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataag 73  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  1570965 aatgatatgttaaaagctataagttcaaatgctaattgaagtagcttaccaaaaa-cgctataag 1570902  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 33138413 - 33138354
Alignment:
Q  116 gttaccaaacaactctactttaaccatacaagcttatacgctagaagatagcggtttggc 175  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||| |||||||    
T  33138413 gttaccaaacaactctactttaatcatacgagcttatacgctataagctagcagtttggc 33138354  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 30001925 - 30001884
Alignment:
Q  33 tcaaatgctagttgaagtagcttaccaaaaaacgctataagc 74  Q
    |||||||||| ||||||| ||||| |||||||||||||||||    
T  30001925 tcaaatgctacttgaagtggcttatcaaaaaacgctataagc 30001884  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 16786477 - 16786529
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagct 75  Q
    |||||| || ||||| |||||||||| ||||||  ||||||||||||||||||    
T  16786477 agctataagctcaaaagctagttgaaatagcttttcaaaaaacgctataagct 16786529  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 49646176 - 49646123
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagcta 76  Q
    |||||| |||||||| |||| ||||| ||||||  |||||||||||||||||||    
T  49646176 agctataagttcaaaagctacttgaaatagcttctcaaaaaacgctataagcta 49646123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 25687139 - 25687087
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagct 75  Q
    |||||| |||||||| |||| ||||| ||||||  ||||||||||||||||||    
T  25687139 agctataagttcaaaagctacttgaaatagcttttcaaaaaacgctataagct 25687087  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 2229115 - 2229168
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagcta 76  Q
    |||||| |||||||| |||| ||||| ||||||  |||||||||||||||||||    
T  2229115 agctataagttcaaaagctacttgaaatagcttctcaaaaaacgctataagcta 2229168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 4638545 - 4638492
Alignment:
Q  23 agctattagttcaaatgctagttgaagtagcttaccaaaaaacgctataagcta 76  Q
    |||||| || ||||| |||||||||| ||||||  |||||||||||||||||||    
T  4638545 agctataagctcaaaagctagttgaaatagcttctcaaaaaacgctataagcta 4638492  T

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