View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_21 (Length: 511)

Name: NF11780_low_21
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_21
NF11780_low_21
[»] chr6 (8 HSPs)
chr6 (89-400)||(28155862-28156172)
chr6 (263-400)||(28224363-28224500)
chr6 (1-77)||(28154963-28155039)
chr6 (83-191)||(28179650-28179751)
chr6 (4-63)||(28179533-28179592)
chr6 (426-495)||(28224630-28224701)
chr6 (414-495)||(28156307-28156389)
chr6 (173-220)||(28179789-28179836)
[»] scaffold0038 (2 HSPs)
scaffold0038 (263-400)||(24861-24998)
scaffold0038 (426-495)||(25128-25199)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 89 - 400
Target Start/End: Original strand, 28155862 - 28156172
Alignment:
Q  89 tctttggtctaaaggtgagcagaaagaaatgacatacgaagctttaaaatctcaccctgcatcgacaaaacaaaaggaaagggaatgatagtg--gtatg 186  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||   ||||    
T  28155862 tctttggtctaaaggtgagcagaa----atgacatacgaagctttaaaatctcactctgcatcgacaaaacaaaaggaaaggg-atgatagtgttatatg 28155956  T
Q  187 tgatagtatgttctcgggaatttattccttg----taagttgtaactattgtgcataggtaatgaaaactgaaaagtgaggtcaatttcaactttgagtc 282  Q
    ||||||||||||||| |||||||| ||||||    ||||||||||||||||| |||||||||       ||||||||||||| ||||||| |||||||||    
T  28155957 tgatagtatgttctcaggaatttaatccttgtatataagttgtaactattgttcataggtaa-------tgaaaagtgaggttaatttcatctttgagtc 28156049  T
Q  283 gttgttatagttgtgtaaatatcggagcttgtttactaacttaattcctttgtagttcatgctatttcgatagtaagggaatta-----tgctctccttt 377  Q
    |||| |||||||   ||| | | ||||||||||||||||||||||||||| |||||||||||||| || |||| || |||||||     |||||||||||    
T  28156050 gttgatatagtttactaattgttggagcttgtttactaacttaattccttggtagttcatgctatgtctatagcaaaggaattatgcattgctctccttt 28156149  T
Q  378 attttgattatgcagctactatt 400  Q
    |||||||||||| | ||||||||    
T  28156150 attttgattatgtacctactatt 28156172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 28224363 - 28224500
Alignment:
Q  263 gtcaatttcaactttgagtcgttgttatagttgtgtaaatatcggagcttgtttactaacttaattcctttgtagttcatgctatttcgatagtaaggga 362  Q
    |||| ||||| ||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||| ||| ||  |||||| || |||||||  ||    
T  28224363 gtcattttcatctttgagtcgttcatatagtttcgtaaatatcggagcttgtttactaacttaattccttggtaatttgtgctatgtccatagtaaaaga 28224462  T
Q  363 attatgctctcctttattttgattatgcagctactatt 400  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  28224463 attatgctctcctttattttgattatgtagctactatt 28224500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28154963 - 28155039
Alignment:
Q  1 tggcggatattcaattcactgatccttgtaaaaagagaaaattattggattgcgaagacgatgattgcagtagttca 77  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154963 tggcggatattcaattcaccgatccttgtaaaaagagaaaattattggattgcgaagacgatgattgcagtagttca 28155039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 28179650 - 28179751
Alignment:
Q  83 ggtatctctttggtctaaaggtgagcagaaagaaatgacatacgaagctttaaaatctcaccctgcatcgacaaaacaaaaggaaagggaatgatagtgg 182  Q
    ||||||| |||||||||||||||||||||||   |||||||| |||||||||||||||| ||||||||    |||| ||||||||||||||||||| |||    
T  28179650 ggtatctttttggtctaaaggtgagcagaaa---atgacatatgaagctttaaaatctctccctgcat----aaaataaaaggaaagggaatgataatgg 28179742  T
Q  183 tatgtgata 191  Q
    |||||||||    
T  28179743 tatgtgata 28179751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 28179533 - 28179592
Alignment:
Q  4 cggatattcaattcactgatccttgtaaaaagagaaaattattggattgcgaagacgatg 63  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  28179533 cggatattcaattcaccgatccttgtaaaaagagaaagttattggattgcgaagacgatg 28179592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 28224630 - 28224701
Alignment:
Q  426 tttggtatgttttcaataaaatcacgtagatttcaataaaggtttt--atgaggtctttccttccatgttcc 495  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||  ||||||| ||||||||||||||||    
T  28224630 tttggtatgttttcaataaaatcttgtagatttctataaaggtttttaatgaggtgtttccttccatgttcc 28224701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 28156307 - 28156389
Alignment:
Q  414 gatagaaaccaa-tttggtatgttttcaataaaatcacgtagatttcaataaaggttttatgaggtctttccttccatgttcc 495  Q
    |||| ||||||| ||| ||||||||||||| |||||| ||||||||  |||| ||||||||||| ||||||||||||||||||    
T  28156307 gataaaaaccaactttcgtatgttttcaatgaaatcatgtagatttttataatggttttatgagctctttccttccatgttcc 28156389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 28179789 - 28179836
Alignment:
Q  173 atgatagtggtatgtgatagtatgttctcgggaatttattccttgtaa 220  Q
    ||||||||||||||||| || |||||||| ||||||||||| ||||||    
T  28179789 atgatagtggtatgtgacaggatgttctcaggaatttattcattgtaa 28179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 24861 - 24998
Alignment:
Q  263 gtcaatttcaactttgagtcgttgttatagttgtgtaaatatcggagcttgtttactaacttaattcctttgtagttcatgctatttcgatagtaaggga 362  Q
    |||| ||||| ||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||| ||| ||  |||||| || |||||||  ||    
T  24861 gtcattttcatctttgagtcgttcatatagtttcgtaaatatcggagcttgtttactaacttaattccttggtaatttgtgctatgtccatagtaaaaga 24960  T
Q  363 attatgctctcctttattttgattatgcagctactatt 400  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24961 attatgctctcctttattttgattatgtagctactatt 24998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 25128 - 25199
Alignment:
Q  426 tttggtatgttttcaataaaatcacgtagatttcaataaaggtttt--atgaggtctttccttccatgttcc 495  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||  ||||||| ||||||||||||||||    
T  25128 tttggtatgttttcaataaaatcttgtagatttctataaaggtttttaatgaggtgtttccttccatgttcc 25199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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