View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_22 (Length: 503)
Name: NF11780_low_22
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 114 - 375
Target Start/End: Complemental strand, 42240729 - 42240468
Alignment:
| Q |
114 |
cagccaaactaactctttctctaattttagttcaatgtttgaaagtcacctacttcaatgaaggagccatctcatctcctatacaaaaccattttctata |
213 |
Q |
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| T |
42240729 |
cagccaaactaactctttctctaattttagttcaatgtttgaaagtcacctacttcaatgaaggagccatctcaactcctatacaaaaccattttctata |
42240630 |
T |
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| Q |
214 |
ccaactccaaccaccaacgaaagcagcctcttttcttatattcaatcaatttatatatgcagatatataccacccccctaagttaagaccaaaaatgtgt |
313 |
Q |
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| T |
42240629 |
ccaactccaaccaccaacgaaagcagcctcttttcttatattcaatcaatttatatatgcagatatataccacccccctaagttaagaccaaaaatgtgt |
42240530 |
T |
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| Q |
314 |
ccttgtcatcgtgactatatttgaaagctaaaccttcaagaagctgacaacatcaaacaagc |
375 |
Q |
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| T |
42240529 |
ccttgtcatcgtgactatatttgaaagctaaaccttcaagaagctgacaacatcaaacaagc |
42240468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 403 - 503
Target Start/End: Complemental strand, 42240463 - 42240363
Alignment:
| Q |
403 |
cttagtcatatatatacaatatatggcttgtgcattttcttcaataacaatggctatgagaatttcttgatactgtgttttatttgcagcagtaataatt |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
42240463 |
cttagtcatatatatacaatatatggcttgtgcattttcttcaataacaatggctatgagaatttctagatactgtgttttattttcagcagtaataatt |
42240364 |
T |
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| Q |
503 |
c |
503 |
Q |
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| T |
42240363 |
c |
42240363 |
T |
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