View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_23 (Length: 452)
Name: NF11780_low_23
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 10485480 - 10485055
Alignment:
| Q |
18 |
attactaacattcaataattagcaacnnnnnnnttactaacattcaaaccaattatctaaaatggctcattaaataaatactcaataacgtaacttatcc |
117 |
Q |
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| T |
10485480 |
attactaacattcaataattagcaacaaaaaaattactaacattcaaaccaattatctaaaatggctcattaaataaatactcaatggcgtaacttatcc |
10485381 |
T |
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| Q |
118 |
aaacacatcaatagattagttaagttgactagggtgatttaattctctttttggcgaataattgaaaaagatagatgaatcaaaattgtttttgaggttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10485380 |
aaacacatcaatagattagttaagttgactagggtgatttaattctctttttggtgaataattgaaaaagatagatgaatcaaaattgtttttgaggttg |
10485281 |
T |
|
| Q |
218 |
cctgatacataaaagtaatgagaaactgaaattgatacaaaaacactcagttttggatgactcacaatggcacatagtatggtcctgtcactaaactttc |
317 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10485280 |
cctgatacataaaagtaatgggaaactaaaattgatacaaaaacactcagttttggatgactcacaatggcacatagtatggtcctgtcactaaactttc |
10485181 |
T |
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| Q |
318 |
ctcaaataaatagacacgaaaaatggacagaaggtgaaaattgctttattagaaagccaaatttcgttaagcaacttcaacaggtgacatcttgcatcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10485180 |
ctcaaataaatagacacgaaaaatggacagaaggtgaaaattgctttattagaaagccaaatttcgttaagcaacttcaacaggtgacatcttgcatcaa |
10485081 |
T |
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| Q |
418 |
attccatatagaaatgtttatctcat |
443 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10485080 |
attccatatagaaatgtttatctcat |
10485055 |
T |
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