View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_24 (Length: 449)
Name: NF11780_low_24
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 4952829 - 4953249
Alignment:
| Q |
13 |
agagggacctcaaaa-aagtaaagagggagagcgtgcttccgcaaccactcttttctacaagtacgatatttatttgctcaacaatatgagtgtctatat |
111 |
Q |
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| T |
4952829 |
agagggacctcaaaaaaagtaaagagggagagcgtgcttccgcaaccactcttttctataagtaccatatttatttgctctacaatatgagtgtctatat |
4952928 |
T |
|
| Q |
112 |
agcatggtgctaaacagacgaaacactcacaattgtgtatgatctaatgtgtcaattaaaatagtctttttatttacatttacatttcgaagtaagaaca |
211 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
4952929 |
agcatggtgctaaacagaggaaacactcacaattgtgtatgatctaatgtgtcaattaaaatagtctttttatttgcatttacatttcgaaataagaaca |
4953028 |
T |
|
| Q |
212 |
ttccacgttaactgaactcatgagtttctacacatcaatgacactatatcgnnnnnnnnnnnnnnnnnntgtatgtatcatgttaaaactcatacatttc |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4953029 |
ttccacgttacctgaactcatgagtttctacacatcaatgacactatatcgaaaacaaaatataaaaaatgtatgtatcatgttaaaactcatacatttc |
4953128 |
T |
|
| Q |
312 |
acgccaatttcaggtcatgtgagatccaaggtgaaagaccctatgttcattaatatgccaatttctaatgatatatgttaaaagaggttgtttaatcgag |
411 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4953129 |
atgccaatttcaggtcatgtgagatccaaggtgaaagaccctatgttcattaatatgccaatttctaatgatatatgttaaaagaggttgtttaattgag |
4953228 |
T |
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| Q |
412 |
acattataattttagtgatgt |
432 |
Q |
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| T |
4953229 |
acattataattttagtgatgt |
4953249 |
T |
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