View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_25 (Length: 442)
Name: NF11780_low_25
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 10795022 - 10794703
Alignment:
| Q |
1 |
tatctccttgtgcactttgtctataatttcagcatgaaacttgaatatttgtctaataatcaaaacaaatcacagaatcgatgaatttctaacatgagtg |
100 |
Q |
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| T |
10795022 |
tatctccttgtgcactttgtctataatttcagcatgaaacttgaatatttgtctaataatcaaaacaaatcacagaatccatgaatttctaacatgagtg |
10794923 |
T |
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| Q |
101 |
cttgcaatattttttattcaggttggtataggtataacaaatgccttgatcaatgcacagaaggctgtaaataaagcatttactgttgagaatttacctg |
200 |
Q |
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| T |
10794922 |
cttgcaatattttttattcaggttggtataggtataacaaatgccttgatcaatgcacagaaggctgtaaataaagcatttactgttgagaatttacctg |
10794823 |
T |
|
| Q |
201 |
taatctcaaccagtgtagcatatgggatttacatggtagtagttagcaacctcaggtattccattttccttcaacaaactactacataatttcagacagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
10794822 |
taatctcaaccagtgtagcatatgggatttacatggtagtagttagcaacctcaggtattccattttccttcaacaaactactacagaattccagacagt |
10794723 |
T |
|
| Q |
301 |
tagtaatcaatcaaatattc |
320 |
Q |
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|||||||||||||||||||| |
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| T |
10794722 |
tagtaatcaatcaaatattc |
10794703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 10794592 - 10794498
Alignment:
| Q |
325 |
acataagtttaagttcagtaatttatatcctcaaattattgtggatttgtttatgtgatcaggtatcaagtactagcaggaattattgagcaacg |
419 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794592 |
acatatgtttaagttcagtaatttatatcctcaaattattgtggatttgtttatgtgatcaggtatcaagtactagcaggaattattgagcaacg |
10794498 |
T |
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