View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_26 (Length: 429)
Name: NF11780_low_26
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 33905888 - 33905479
Alignment:
| Q |
9 |
aatgagatgaataatgatgggttattatttcagctgcagatggttggaaggtatgtctcattggagtgttagagactagacaacttcatgaaagctctca |
108 |
Q |
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| T |
33905888 |
aatgagatgaataatgatgggttattatttcagctgcagatggttggaaggtatgtctcattggagtgttagagactagacaacttcatgaaagctctca |
33905789 |
T |
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| Q |
109 |
atgataaaacaccaaatctatccacacacatacacataaaaatacaactacaatagatagtgttacatcttaaatatttttcaattctaaaggggaaaag |
208 |
Q |
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| T |
33905788 |
atgataaaacaccaaatctatccacacacatacacataaaaatacaactacaatagatagtgttacatcttaaatatttttcaattctaaaggggaaaag |
33905689 |
T |
|
| Q |
209 |
ataagaaagaaatgaaactacaaaaggtttcttcaaatgaagaccaaaataaattttcattctacattaatacttcaattccaaccaatagtagaatcat |
308 |
Q |
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| T |
33905688 |
ataagaaagaaatgaaactacaaaaggtttcttcaaatgaagaccaaaagaaattttcattctacattaatacttcaattccaaccaatagtagaatcat |
33905589 |
T |
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| Q |
309 |
atttccaaaatctt---ctttcctaaat---cattacaatgtcaatttcactatcaaaatcataactatattgtatataaaaagattcttgaatttctaa |
402 |
Q |
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|||||| ||||| | | ||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33905588 |
atttcctaaatcatgaaccttcatgcattaacgttacaatgtcaatttcactatcaaaatcataactatattgtatataaaaacattcttgaatttctaa |
33905489 |
T |
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| Q |
403 |
agacaaaact |
412 |
Q |
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| T |
33905488 |
agacaaaact |
33905479 |
T |
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