View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_27 (Length: 426)
Name: NF11780_low_27
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 47624921 - 47625330
Alignment:
| Q |
1 |
catgtataaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaac |
100 |
Q |
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| T |
47624921 |
catgtataaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaac |
47625020 |
T |
|
| Q |
101 |
gatatttagatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagc |
200 |
Q |
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| T |
47625021 |
gatatttagatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagc |
47625120 |
T |
|
| Q |
201 |
agcttaaacagctatagtaaaatcatgtcatgccactgagagtacagagtcatctcttaatattgaaggtaattggtaccttggagagctccagtgaagg |
300 |
Q |
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| T |
47625121 |
agcttaaacagctatagtaaaatcatgtcatgccactgacagtacagagtcatctcttaatattgaaggtaattgttaccttggagagctccagtgaagg |
47625220 |
T |
|
| Q |
301 |
aggaataactatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctgagaattctcctgtatattggaggagcccat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625221 |
aggaataactatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctgagaattctcctgtatattggaggagcccat |
47625320 |
T |
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| Q |
401 |
atatgtgatg |
410 |
Q |
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|||||||||| |
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| T |
47625321 |
atatgtgatg |
47625330 |
T |
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