View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_29 (Length: 420)
Name: NF11780_low_29
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 2357781 - 2357454
Alignment:
| Q |
19 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357781 |
ttagggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
2357682 |
T |
|
| Q |
119 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357681 |
tgctttttccaatgtatgaggatttttcagtaacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
2357582 |
T |
|
| Q |
219 |
tgaagtgaaaattttataaaaatgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagttcgtatagagtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357581 |
tgaagtgaaaattttataaaaatgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagttcgtatagagtt |
2357482 |
T |
|
| Q |
319 |
tttctttctgttccattggccctccact |
346 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
2357481 |
tttctttctgttccattggccctccact |
2357454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 2363096 - 2362891
Alignment:
| Q |
19 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
118 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||| | |||||| |||||| ||||||| | ||| ||||||| || ||||||||| |||| |
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| T |
2363096 |
ttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatcaagttcttcttt |
2362997 |
T |
|
| Q |
119 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
218 |
Q |
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|||||||| |||| | |||||||| | | ||||||||||||||||| |||||||||| | |||| ||||||||||| | ||||||| ||||||| |
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| T |
2362996 |
tgcttttttcaatattagaggatttctaagcaacaaacatattgcccatgtaagggtaacgctagttgtttcaattcctcccccgattagtgtctgtaaa |
2362897 |
T |
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| Q |
219 |
tgaagt |
224 |
Q |
| |
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||||| |
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| T |
2362896 |
agaagt |
2362891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 2351465 - 2351285
Alignment:
| Q |
19 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
118 |
Q |
| |
|
||||||||||||| | ||| |||||||||| ||||||||| |||||||||| ||||| | ||| | |||||||| |||||||||| |||| |
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| T |
2351465 |
ttagggtttcttttactatagcttgaaggtataccaacttaccaatatccgactcgtttacaagcctttctttgccaacgtgagtgtcaagttcttcttt |
2351366 |
T |
|
| Q |
119 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcc |
199 |
Q |
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|||||||| |||| | ||||||||||||||| |||||||||||||| ||||| |||| | |||||||||| ||||||| |
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|
| T |
2351365 |
tgcttttttcaatacaagaggatttttcaatagtaaacatattgcccatgtaagagtaacactacttgtgtcacttcctcc |
2351285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 2368842 - 2368684
Alignment:
| Q |
19 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
118 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||| | ||| || | || | ||||||| | ||| ||||||| || ||||||||| |||| |
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| T |
2368842 |
ttagggtttctttgacaatggcttgaagatacaccaacttgtctatgtctgtctctcttacacacctctcttttccaacttgagtatcaagttcttcttt |
2368743 |
T |
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| Q |
119 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaa |
177 |
Q |
| |
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||||||||||||| | |||||||| | | |||||||||||||||||| |||||||||| |
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|
| T |
2368742 |
tgctttttccaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaa |
2368684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 2356592 - 2356557
Alignment:
| Q |
366 |
ttgtattgataaagcgaatataatgaaagtatacat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
2356592 |
ttgtattgataaagcgaatataatgaaagtatacat |
2356557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 2307242 - 2307175
Alignment:
| Q |
108 |
agttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggt |
175 |
Q |
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|||||| ||||||||||||||| | | ||||||| ||||||| |||||||| |||||| |||||||| |
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| T |
2307242 |
agttcttcttttgctttttccattacaagaggattgttcaatagcaaacatagtgcccatgtaagggt |
2307175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 4305794 - 4305589
Alignment:
| Q |
19 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
118 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||| | ||||||||||| | ||||||| | ||| | ||||| |||| |||||||||| ||| |
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| T |
4305794 |
ttagggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaacttggatgtcaagttcttcttg |
4305695 |
T |
|
| Q |
119 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
218 |
Q |
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||||||||| | | | ||||||||| || ||||||||| |||||||| ||||||| | | | ||||||||| |||||||||||| |||| || |||| |
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| T |
4305694 |
tgctttttctattacaagaggattttccagtaacaaacacattgcccatataagggtgacactagttgtgtcaactcctcctgcaatcagtgtctttaaa |
4305595 |
T |
|
| Q |
219 |
tgaagt |
224 |
Q |
| |
|
||||| |
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|
| T |
4305594 |
cgaagt |
4305589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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