View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_30 (Length: 414)

Name: NF11780_low_30
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_30
NF11780_low_30
[»] chr7 (2 HSPs)
chr7 (223-394)||(39386463-39386638)
chr7 (43-150)||(39386296-39386390)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 223 - 394
Target Start/End: Original strand, 39386463 - 39386638
Alignment:
Q  223 ccctttctattctcccgcattttccctaatcttttttaccgtac----ttagtcgtcctttagaactgtgagggtcgaggacatgtatctgaattgtttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  39386463 ccctttctattctcccgcattttccctaatcttttttaccgtacatgattagtcgtcctttagaactgtgagggtcga---catgtatctgaattgtttg 39386559  T
Q  319 aaaacattgggtacattattgacat---ttgttaagtaaaaaaaagagattacgcaacaagtgatatgttcgatattgt 394  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39386560 aaaacattgggtacattattgacatttgttgttaagtaaaaaaaagagattacgcaacaagtgatatgtccgatattgt 39386638  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 39386296 - 39386390
Alignment:
Q  43 ttggtcatatcattcttaagaagattgaggatgtcatttgaaaaagaagcatgaatgagaaggtatgtattctcaaaagttaattcatttaacttaatat 142  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||||||             |||||||||||||||||||||||||||||||||||||||    
T  39386296 ttggtcgtatcattcttaagaagattgatgatgttatttgaaaaagaa-------------ggtatgtattctcaaaagttaattcatttaacttaatat 39386382  T

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