View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_31 (Length: 413)
Name: NF11780_low_31
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_31 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 18056457 - 18056870
Alignment:
| Q |
1 |
tcatacaacgctgcaaaaggcaacatcgccctttgacaacgaaatcacaagggnnnnnnnctagatctatgtaaaacttactaatttagactaaaatagg |
100 |
Q |
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| T |
18056457 |
tcatacaacgctgcaaaacacaacatcaccctttgacaacgaaatcacaagggaaaaaaactagatctatgtaaaacttactaatttagactaaaatatg |
18056556 |
T |
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| Q |
101 |
gagataaagatggaaatggatgattttgtgtcaaaaatttatcc-aaaccttcctctcaatgaagaaaatggaagagtaaactaggaccgacttattgaa |
199 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18056557 |
gagataaagatggaaataggtgattttgtgtcaaaaatttatcctaaaccttcctctcaatgaagaaaatggaagagtaaactaggaccgacttattgaa |
18056656 |
T |
|
| Q |
200 |
aagagagtgaaaaagatggaattttaagaagcactcctagtagagacatcatgatccttacctacatgatggatttctggagagtgaggagggtcatcaa |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18056657 |
aagatagtgaaaaagatggaattttaagaagcactcctagtggagacatcatgatccttacctacatgatggatttctggagagtgaggagggtcatcaa |
18056756 |
T |
|
| Q |
300 |
atggaagaatgaacaaacctttgaacactgaactgaacttggcttccttcattgtactgaatgtgttcttaatctcacaaattgcttgtatgaatgtaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18056757 |
atggaagaatgaacaaacctttgaacactgaactgaacttggcttccttcattgtactgaatgtgttcttaatctcacaaattgcttgtatgaatgtaaa |
18056856 |
T |
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| Q |
400 |
gtaaagagacaaaa |
413 |
Q |
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| T |
18056857 |
gtaaagagccaaaa |
18056870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 25631639 - 25631745
Alignment:
| Q |
61 |
ctagatctatgtaaaacttactaatttagactaaaatagggagataaagatggaaatggatgattttgtgtcaaaaatttatccaaaccttcctctcaat |
160 |
Q |
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|||||||||||| ||| | ||| ||||||| | |||||| |||| ||||||||| | |||||||||| |||||||||| | ||||| | || |||||| |
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| T |
25631639 |
ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatggagagggatgattttaggtcaaaaattgacccaaaaccacccctcaat |
25631738 |
T |
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| Q |
161 |
gaagaaa |
167 |
Q |
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||||||| |
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| T |
25631739 |
gaagaaa |
25631745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 4172529 - 4172423
Alignment:
| Q |
61 |
ctagatctatgtaaaacttactaatttagactaaaatagggagataaagatggaaatggatgattttgtgtcaaaaatttatccaaaccttcctctcaat |
160 |
Q |
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|||||||||||| ||| | ||| ||||||| | |||||| |||| ||||||| | |||||||||||| ||| || |||| | ||||| | || |||||| |
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| T |
4172529 |
ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagatggatgattttatgttaagaattgacccaaaaccacccctcaat |
4172430 |
T |
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| Q |
161 |
gaagaaa |
167 |
Q |
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| T |
4172429 |
gaagaaa |
4172423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 35580430 - 35580315
Alignment:
| Q |
61 |
ctagatctatgtaaaacttactaatttagactaaaatagggagataaagatggaaatggatgattttgtgtcaaaaatttatcc-aaaccttcctctcaa |
159 |
Q |
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|||||||||||| ||| | ||| ||||| | | |||||| |||| ||||||| | ||| ||||||| ||||||||||| | || ||||| |||||||| |
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| T |
35580430 |
ctagatctatgtgaaaatcacttatttaaattgaaatagagagaaaaagatgaagatgagtgattttatgtcaaaaattgacccaaaaccaccctctcaa |
35580331 |
T |
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| Q |
160 |
tgaagaaaatggaaga |
175 |
Q |
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| T |
35580330 |
tgaagaaattggaaga |
35580315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 33109799 - 33109679
Alignment:
| Q |
61 |
ctagatctatgtaaaacttactaatttagactaaaatagggagataaagatggaaatggatgattttgtgtcaaaaatttatccaaaccttcctctcaat |
160 |
Q |
| |
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|||||||||||| ||| | ||| ||||||| | ||||| |||| ||||||| | ||||| |||||| |||||||||| | ||||| | || ||||| |
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| T |
33109799 |
ctagatctatgtgaaaatcacttatttagattgaaataaagagaaaaagatgaagatggacgattttaggtcaaaaattgacccaaaaccacccgtcaat |
33109700 |
T |
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| Q |
161 |
gaagaaaatggaagagtaaac |
181 |
Q |
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||||||| |||||||| |||| |
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| T |
33109699 |
gaagaaactggaagagaaaac |
33109679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 18569422 - 18569542
Alignment:
| Q |
61 |
ctagatctatgtaaaacttactaatttagactaaaatagggagataaagatggaaatggatgattttgtgtcaaaaatttatccaaaccttcctctcaat |
160 |
Q |
| |
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|||||||||||| ||| | ||| ||||||| | |||||| |||| ||||||| | | | |||||| ||||||||||| | ||||| | || |||||| |
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| T |
18569422 |
ctagatctatgtgaaaatcacttatttagattgaaatagagagaaaaagatgaagacaggtgatttcttgtcaaaaattgacccaaaaccacccctcaat |
18569521 |
T |
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| Q |
161 |
gaagaaaatggaagagtaaac |
181 |
Q |
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||||||| |||||||| |||| |
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| T |
18569522 |
gaagaaactggaagagaaaac |
18569542 |
T |
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