View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_33 (Length: 406)
Name: NF11780_low_33
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 35 - 388
Target Start/End: Complemental strand, 5991026 - 5990671
Alignment:
| Q |
35 |
ttttaaatacaaatcacatcaaagggagtctttaaccatttcttttgaaaaccatagaggatatcaatccttaagcaaaaaggttacaaga--gttgaaa |
132 |
Q |
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| T |
5991026 |
ttttaaatacaaatcacatcaaagggagtctttaaccatttcttttgaaaaccatagaggatatcaatccttaagcaaaaaggttacaagatcgttgaaa |
5990927 |
T |
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| Q |
133 |
aacatgccagaggaaacttttctccatgtgcttcatacttaataactcaatcaagagacatgtgggagtgggtttctatgtcaacgtagagaacaaatgg |
232 |
Q |
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| T |
5990926 |
accttgccagaggaaacttttctccatgtgcttcatagttaataactcaatcaagagacatgtgggagtgggattctgtgtcaacgtagataacaaatgg |
5990827 |
T |
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| Q |
233 |
tagtgtgtcaacataaagtttcaatttccaactttctaaatttagtagaaatgaagaacacaaggtatgtaaactagtacggttatatctttgcataatg |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5990826 |
tagtgtgtcaacataaagtttcaatttccaactttctaaatttagtagaaatgaagaacacaaggtatgtaaactagtacggttatatctttgcataatg |
5990727 |
T |
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| Q |
333 |
caaatacggttaagatctttagtacgaatggtccatatacattatgatgaactttt |
388 |
Q |
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| T |
5990726 |
caaatacggttaagatctttagtacgaatggtccatatacattatgatgaactttt |
5990671 |
T |
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