View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_35 (Length: 382)
Name: NF11780_low_35
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_35 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 36 - 352
Target Start/End: Original strand, 37265173 - 37265483
Alignment:
| Q |
36 |
gtgttgacagttttttactttgctttgaatttactggatgcatattattggcacgagcatatgaatttttgggattgatagtttattggaataacttgcc |
135 |
Q |
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| T |
37265173 |
gtgttgacagttttttactttgctttgaatttactggatgcatattattgacacgagcatatgaatttttgggattgatagtttattggaataacttgcc |
37265272 |
T |
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| Q |
136 |
ttggccctttgtgggaaatttggggaaaggtttgtatttttgttgatgtgtgattaaggtgctaaatgttgaaggttggttctcaagtcaagatgtaatg |
235 |
Q |
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| T |
37265273 |
ttggccctttgtgggaaatttggggaaaggtttgtatttttgttgatgtgtgattaaggtgccaaaagttgaaggttggttctcaagtgaag-----atg |
37265367 |
T |
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| Q |
236 |
taaggttggaaaatttgggagattgatggttgttgtgaatgtgatgttggttcaaatccttcctttctgggttgcaggtgaatagcttaacaaaaagcct |
335 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
37265368 |
taaggttggaaaatttgggagattgaaggttgctgtgaatgtgatgttggttcaaatcctagc-ttctgggttgcaggcgaatagcttaacaaaaagcct |
37265466 |
T |
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| Q |
336 |
ttgatattttgcacata |
352 |
Q |
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| T |
37265467 |
ttgattttttgcacata |
37265483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 36 - 353
Target Start/End: Original strand, 34701 - 35014
Alignment:
| Q |
36 |
gtgttgacagttttttactttgctttgaatttactggat--gcatattattggcacgagcatatgaatttttgggattgatagtttattggaataacttg |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34701 |
gtgttgacagttttttactttgctttgaatttactggatatgcatattattggcacgagcatatgaatttttgggattgatagtttattagaataacttg |
34800 |
T |
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| Q |
134 |
ccttggccctttgtgggaaatttggggaaaggtttgtatttttgttgatgtgtgattaaggtgctaaatgttgaaggttggttctcaagtcaagatgtaa |
233 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| | |
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| T |
34801 |
ccttagccctttgtgggaaatttggggaaaggtttgtatttttgttgatgtgtgattaaggtgccaaaagttgaaggttggttctcaagtgaag-----a |
34895 |
T |
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| Q |
234 |
tgtaaggttggaaaatttgggagattgatggttgttgtgaatgtgatgttggttcaaatccttcctttctgggttgcaggtgaatagcttaacaaaaagc |
333 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |
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| T |
34896 |
tgtaaggttggaaaatttgggagattgaaggttgctgtgaatgtgatgttggttcaaatcctt-cgttctgggttgcaggcgaatagcttaacaaaaagc |
34994 |
T |
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| Q |
334 |
ctttgatattttgcacatat |
353 |
Q |
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||||||| |||||||||||| |
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| T |
34995 |
ctttgattttttgcacatat |
35014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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