View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_36 (Length: 375)
Name: NF11780_low_36
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 4952845 - 4952495
Alignment:
| Q |
8 |
ttttttgaggtccctctaaataaactatattaaaataaataattttgtcaaaatttaatgagttagagttattggtgagaccacttttctaatttttggt |
107 |
Q |
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| T |
4952845 |
ttttttgaggtccctctaaataaactatattaaaataaataattttgtcaaaatttaatgagttagagttattggtgagaccacttttctaatttttggt |
4952746 |
T |
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| Q |
108 |
gaggcaccgagttagagagattgaatgtttatttaaaaaattgtaaatgtgatggtatgtaaggatccacccaaaatgggtgcttcactgtggatggttt |
207 |
Q |
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| T |
4952745 |
gaggcaccgagttagagagattgaatgtttatttaaaaaattgtaaatgtgatggtatgtaaggacccacccaaaatgggcgcttcactgtggatggttt |
4952646 |
T |
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| Q |
208 |
tacaataggaaaatgctagagaccgcgagaagcattttcccgagcggttcccgacattgctggcaagttaatagccataggattcataaaaaattgaaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4952645 |
tacaataggaaaatgctagagaccgcgagaagcatttttccgagcggtttccgacattgctggcaagttaatagccataggattcataaaaaaatgaaaa |
4952546 |
T |
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| Q |
308 |
taagaacctgaccccccatgttttgtggccagcaactgcttttattggttgg |
359 |
Q |
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| T |
4952545 |
taagaacctgac-ccccatgttttgtggccagcaaccgcttttattggttgg |
4952495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 31605261 - 31605115
Alignment:
| Q |
214 |
aggaaaatgctagagaccgcgagaagcattttcccgagcggttcccgacattgctggcaagttaatagccataggattcataa-aaaattgaaaataaga |
312 |
Q |
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| T |
31605261 |
aggaaaatgctagagaccgcgagaagcattttcccgagcggttcctgaaattgctggcaagttaatagccataggattcataaaaaaattgaaaataaaa |
31605162 |
T |
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| Q |
313 |
acctgaccccccatgttttgtggccagcaactgcttttattggttgg |
359 |
Q |
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| T |
31605161 |
acctgaccccccatgttttgtggccagcagcggctttcattggttgg |
31605115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 45102195 - 45102049
Alignment:
| Q |
214 |
aggaaaatgctagagaccgcgagaagcattttcccgagcggttcccgacattgctggcaagttaatagccataggattcataaaaaa-ttgaaaataaga |
312 |
Q |
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| T |
45102195 |
aggaaaatgctagagaccgcgagaaacattttcccgagcggttcccgacattgctggcaagttaatagccataggattcataaaaaatttgaaaataaaa |
45102096 |
T |
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| Q |
313 |
acctgaccccccatgttttgtggccagcaactgcttttattggttgg |
359 |
Q |
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||||||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
45102095 |
acctgaccccccatgttttgtggccagcagtttctttcattggttgg |
45102049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 21209271 - 21209347
Alignment:
| Q |
215 |
ggaaaatgctagagaccgcgagaagcattttcccgagcggttcccgacattgctggcaagttaatagccataggatt |
291 |
Q |
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| T |
21209271 |
ggaaaatgcttaagaccgcgagaagcattttcccgagcggttcacgaatttgttggccagtaaatagccattggatt |
21209347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 20254133 - 20254194
Alignment:
| Q |
23 |
ctaaataaactatattaaaataaataattttgtcaaaatttaatgagttagagttattggtg |
84 |
Q |
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| T |
20254133 |
ctaaataaattgtattaaaataaataattttgttgaaatttcatgatttaacgttattggtg |
20254194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 13475289 - 13475210
Alignment:
| Q |
6 |
acttttttgaggtccctctaaataaactatattaaaataaat-aattttgtcaaaatttaatgagttagagttattggtg |
84 |
Q |
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| T |
13475289 |
acttttatgaggtctccctaaataaattatattaaaataaatgatttttgttgaaatttagtgatttaaagttattggtg |
13475210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 24569125 - 24569190
Alignment:
| Q |
21 |
ctctaaataaactatattaaaataaataa-----ttttgtcaaaatttaatgagttagagttattg |
81 |
Q |
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||||| ||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
24569125 |
ctctagataaattatattaaaataaataaatattttttgttaaaatttaatgatttagagttattg |
24569190 |
T |
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