View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11780_low_43 (Length: 308)
Name: NF11780_low_43
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 2361397 - 2361681
Alignment:
| Q |
19 |
aaagaggctcctatagttcaaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctg |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||| ||||||||||||||||||||| ||||||| |
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| T |
2361397 |
aaagaggctcctatagttcaaggggcatggccaatacttggtcacctacaactattaaaaaattcacaaaaacctcatagaaccttaggtgcattggctg |
2361496 |
T |
|
| Q |
119 |
ataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2361497 |
ataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgactt |
2361596 |
T |
|
| Q |
219 |
agcaatatccaatcgccctaaacttgaagcaactcaacatttgggttacaatggtgccatgtttgtgttagcaccctatgcttct |
303 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
2361597 |
ggcaatatccaatcgccctaaacttgaagcaactcaacatttgggttacaatggtgccatgtttgcgttagcaccctatggttct |
2361681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 2366001 - 2366231
Alignment:
| Q |
19 |
aaagaggctcctatagttcaaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2366001 |
aaagaggatcctatagttcaaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgcattggctg |
2366100 |
T |
|
| Q |
119 |
ataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgactt |
218 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2366101 |
ataaatatggacccttgttcactattaagattggttccaaacgtgctttggttcttagcaattgggaaatggcaaaggaatgtttcaccaaaattgactt |
2366200 |
T |
|
| Q |
219 |
agcaatatccaatcgccctaaacttgaagca |
249 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |
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|
| T |
2366201 |
ggcaatatccactcgccctaaaggtgaagca |
2366231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 281
Target Start/End: Original strand, 2355738 - 2355976
Alignment:
| Q |
43 |
gcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcacta |
142 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||| || |||| |||||||| ||||||| || |||||||||||||||||||||||||| | |
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| T |
2355738 |
gcatggccaatacttggtcacctcccattgttaaaggcttccaaagcaccacatagaactttaggtgatttagctgataaatatggacccttgttcacca |
2355837 |
T |
|
| Q |
143 |
ttaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaact |
242 |
Q |
| |
|
| || |||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||| ||| ||||| | ||||| |||| ||| |||||||| |
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| T |
2355838 |
tcaaacttggttccaaaaatgctttggtacttagcaattcggaaatggcgaaggaatgtttcaccaaatttgacgttgcaatttccactcgtcctaaact |
2355937 |
T |
|
| Q |
243 |
tgaagcaactcaacatttgggttacaatggtgccatgtt |
281 |
Q |
| |
|
|| |||||| ||||||||| ||||||||| |||||||| |
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|
| T |
2355938 |
tgttgcaactgaacatttggcttacaatggagccatgtt |
2355976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 2305712 - 2305877
Alignment:
| Q |
38 |
aaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgtt |
137 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| || || |||||||||| ||||| ||||||| |||| ||||||||||||||||| || || |
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| T |
2305712 |
aaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagggtcttaggtaccttagctgataaatatggaccattatt |
2305811 |
T |
|
| Q |
138 |
cactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgttt |
203 |
Q |
| |
|
||| || ||||||||||| ||||||||||| || | | ||||||||||||||| ||||||||||| |
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|
| T |
2305812 |
caccatcaagcttggttctaaacgtgctttaattctcaacaattgggaaatggccaaggaatgttt |
2305877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 2338033 - 2338201
Alignment:
| Q |
38 |
aaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgtt |
137 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||| || | |||||||||| |||||| ||||||| |||| ||||||||||||||||| || || |
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| T |
2338033 |
aaggtgcatggccaatacttggtcatctctcactttttcgtggcacacaatcaccccatagagtcttaggtaccttagctgataaatatggaccattatt |
2338132 |
T |
|
| Q |
138 |
cactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcac |
206 |
Q |
| |
|
||| || |||||||| | |||| |||||| | | | ||||||||||||||| |||||||||||||| |
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|
| T |
2338133 |
caccatcaagcttggcactaaacatgctttaatactcaacaattgggaaatggccaaggaatgtttcac |
2338201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 2349082 - 2349250
Alignment:
| Q |
38 |
aaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgtt |
137 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | || || |||| |||| || ||| |||||| | || ||||||||||||||||| | || |
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| T |
2349082 |
aaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatatt |
2349181 |
T |
|
| Q |
138 |
cactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcac |
206 |
Q |
| |
|
|||||| ||||||||||| |||| |||||| | ||| |||||||||||| || |||||||||||||| |
|
|
| T |
2349182 |
cactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac |
2349250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 194
Target Start/End: Complemental strand, 2264182 - 2264031
Alignment:
| Q |
43 |
gcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgttcacta |
142 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| | ||| || ||||||||| ||| ||||| || ||||| | |||||||||||| | ||||| | |
|
|
| T |
2264182 |
gcatggccaatacttggtcacctcttagtcttaggtggttctaaaacacctcataaaacattaggcaccatggctaacaaatatggacccctattcacca |
2264083 |
T |
|
| Q |
143 |
ttaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaa |
194 |
Q |
| |
|
| || |||||| | || ||||||||||| | |||||||||||||||||||| |
|
|
| T |
2264082 |
taaaacttggtacaaatcgtgctttggtactaagcaattgggaaatggcaaa |
2264031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 4303159 - 4303422
Alignment:
| Q |
19 |
aaagaggctcctatagttcaaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctg |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
4303159 |
aaagaggctcccatagttcaaggggcatggccaatacttggtcaccttcaactattgttaggttcacaaggacctcatagaaccttaggtgcattggctg |
4303258 |
T |
|
| Q |
119 |
ataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgactt |
218 |
Q |
| |
|
| | ||||||||| || ||||| || || |||||||| | | ||||||||| | || |||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
4303259 |
acacatatggacctttattcacaatcaaacttggttcgagaaatgctttggtgctaagtaattgggaaatggctgaggaatgtttcaccaaaattgactt |
4303358 |
T |
|
| Q |
219 |
agcaatatccaatcgccctaaacttgaagcaactcaacatttgggttacaatggtgccatgttt |
282 |
Q |
| |
|
||||| ||| ||||||||| ||||||| ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
4303359 |
ggcaatttccgatcgccctacacttgaaacaactcaacatatgacttacaatggagccatgttt |
4303422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 41340088 - 41340206
Alignment:
| Q |
164 |
ctttggttgttagcaattgggaaatggcaaaggaatgtttcacaaaaattgacttagcaatatccaatcgccctaaacttgaagcaactcaacatttggg |
263 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| || ||| ||||||| ||| | || ||||||||||||||||||| |||| ||||||||| |
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|
| T |
41340088 |
ctttggtgcttagcaattgggaaatggctgaggaatgttttaccaaagttgacttggcagtttcaaatcgccctaaacttgaagtaactaaacatttggc |
41340187 |
T |
|
| Q |
264 |
ttacaatggtgccatgttt |
282 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
41340188 |
ttacaatggagccatgttt |
41340206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 5806261 - 5806093
Alignment:
| Q |
38 |
aaggggcatggccaatacttggtcacctcccactattaagatcttcacaatcacctcatagaaccttaggtgccttggctgataaatatggacccttgtt |
137 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | || | ||||| |||| ||||||| |||||||||| | | ||||||| ||||||| | || |
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|
| T |
5806261 |
aaggtgcatggccaatacttggtcacctcccaattttttgtggcacacaagcaccccatagaatcttaggtgccctaggtgataaacatggaccaatatt |
5806162 |
T |
|
| Q |
138 |
cactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtttcac |
206 |
Q |
| |
|
||| || ||||||||| | |||| ||| || || | | ||||||||||||||| |||||||||||||| |
|
|
| T |
5806161 |
caccatcaagcttggtcctaaacatgccttagtactcaacaattgggaaatggctaaggaatgtttcac |
5806093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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