View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11780_low_44 (Length: 307)

Name: NF11780_low_44
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11780_low_44
NF11780_low_44
[»] chr7 (10 HSPs)
chr7 (33-294)||(3939401-3939662)
chr7 (39-163)||(11405477-11405601)
chr7 (49-159)||(11382117-11382227)
chr7 (185-294)||(11408826-11408935)
chr7 (61-161)||(28507817-28507917)
chr7 (196-280)||(13952456-13952543)
chr7 (49-140)||(11406123-11406214)
chr7 (193-271)||(28509759-28509837)
chr7 (121-163)||(41963934-41963976)
chr7 (186-286)||(31593493-31593596)
[»] scaffold0097 (1 HSPs)
scaffold0097 (30-174)||(27044-27188)
[»] chr2 (12 HSPs)
chr2 (30-174)||(20723215-20723359)
chr2 (173-294)||(21831990-21832115)
chr2 (30-174)||(21833075-21833219)
chr2 (111-174)||(26391235-26391298)
chr2 (97-163)||(29901865-29901931)
chr2 (56-174)||(31501548-31501666)
chr2 (121-163)||(2120329-2120371)
chr2 (121-163)||(2776750-2776792)
chr2 (232-286)||(26172366-26172420)
chr2 (111-163)||(28652261-28652313)
chr2 (121-174)||(695215-695267)
chr2 (111-163)||(4174403-4174455)
[»] chr3 (9 HSPs)
chr3 (41-163)||(13826709-13826831)
chr3 (112-174)||(180784-180846)
chr3 (66-163)||(55150440-55150537)
chr3 (111-174)||(45034265-45034328)
chr3 (111-163)||(52560691-52560743)
chr3 (112-163)||(18907803-18907854)
chr3 (111-174)||(48164402-48164465)
chr3 (201-286)||(48162485-48162573)
chr3 (66-163)||(8791-8888)
[»] chr1 (9 HSPs)
chr1 (66-163)||(31387132-31387229)
chr1 (57-173)||(4912348-4912464)
chr1 (66-163)||(50914482-50914579)
chr1 (121-163)||(15292066-15292108)
chr1 (56-174)||(18242546-18242664)
chr1 (121-174)||(27106501-27106554)
chr1 (56-163)||(42464034-42464141)
chr1 (111-163)||(42056216-42056268)
chr1 (122-174)||(46192770-46192822)
[»] chr8 (4 HSPs)
chr8 (78-174)||(23713936-23714032)
chr8 (170-294)||(23715518-23715647)
chr8 (188-253)||(23878691-23878756)
chr8 (56-159)||(44116330-44116433)
[»] chr4 (3 HSPs)
chr4 (186-267)||(55740613-55740697)
chr4 (123-163)||(12025362-12025402)
chr4 (186-288)||(55763324-55763429)
[»] chr5 (5 HSPs)
chr5 (111-173)||(9039359-9039421)
chr5 (124-163)||(37980740-37980779)
chr5 (121-163)||(7253139-7253181)
chr5 (125-163)||(19876223-19876261)
chr5 (121-163)||(23066854-23066896)
[»] chr6 (2 HSPs)
chr6 (112-163)||(5619922-5619973)
chr6 (97-152)||(19269207-19269262)
[»] scaffold0013 (2 HSPs)
scaffold0013 (61-163)||(63153-63255)
scaffold0013 (212-280)||(85913-85981)
[»] scaffold0916 (1 HSPs)
scaffold0916 (230-271)||(1230-1271)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 3939662 - 3939401
Alignment:
Q  33 caacaaagtagccaaaatctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggt 132  Q
    |||||||||||| |  ||||| ||||||||||||||||| ||||||||||||||   |||||||||||||||  |||||||||| |||||||||||||||    
T  3939662 caacaaagtagcaagcatctccttaggcatctcagggacatctgacggatgtctgcagatgttatgtataaatccaaactgcctcttaacccgctcaggt 3939563  T
Q  133 aaatgacgatacaccctctccgtcccgcacacaagtcatccctcaaatcccccgcatacccggcatactcatgcgcttgtgtcagatcaaccacatggga 232  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  3939562 aaatgacgatacaccctctccttcccgcacaccagtcatccctcaaatcccccgcatacccggcatactcatgcgcttgtgtcggatcaaccacctggga 3939463  T
Q  233 gtaatccatctgtgattgtgagctatctccaactagccttgcgtcccttcgctttcgggtct 294  Q
    ||||||||||||||| | |||||||| |||| |||||||| ||||||| |||||||||||||    
T  3939462 gtaatccatctgtgactatgagctatatccatctagccttacgtccctacgctttcgggtct 3939401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 11405477 - 11405601
Alignment:
Q  39 agtagccaaaatctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatga 138  Q
    ||||||||  ||||| ||||||||||||||||  |||||||||||||| |||||||  |||||||||||||||| ||| || |||| |||||||||||||    
T  11405477 agtagccatcatctccttaggcatctcagggatatctgacggatgtctggggatgtactgtataaagtcaaacttcctctttaccctctcaggtaaatga 11405576  T
Q  139 cgatacaccctctccgtcccgcaca 163  Q
    || ||||||||||||  ||||||||    
T  11405577 cggtacaccctctcctacccgcaca 11405601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 11382117 - 11382227
Alignment:
Q  49 atctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccc 148  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||    ||||||||||||| |||| || |||| |||||||||||||||||||||||    
T  11382117 atctccttaggcatctcagggacatctgacggatgtctggggatgtaccttataaagtcaaacggcctctttaccctctcaggtaaatgacgatacaccc 11382216  T
Q  149 tctccgtcccg 159  Q
    ||||| |||||    
T  11382217 tctccttcccg 11382227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 11408826 - 11408935
Alignment:
Q  185 cgcatacccggcatactcatgcgcttgtgtcagatcaaccacatgggagtaatccatctgtgattgtgagctatctccaactagccttgcgtcccttcgc 284  Q
    ||||||||| | |||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||||  |||||| ||||||| |||||||| |||    
T  11408826 cgcataccccggatactcatgcacttgtgtcggatccaccacctgggagtaatccatctgtgactgtgagccctctccacctagcctcgcgtccctacgc 11408925  T
Q  285 tttcgggtct 294  Q
    || |||||||    
T  11408926 ttccgggtct 11408935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 28507817 - 28507917
Alignment:
Q  61 atctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgc 160  Q
    ||||||||||| |||||||||||| | |||||||  || ||| |  |||||||||| || ||||||| |||||||||||| |||||||||||| ||||||    
T  28507817 atctcagggacatctgacggatgtttggggatgtcctgcatatacccaaactgcctcttcacccgcttaggtaaatgacggtacaccctctccttcccgc 28507916  T
Q  161 a 161  Q
    |    
T  28507917 a 28507917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 13952456 - 13952543
Alignment:
Q  196 catactcatgcgcttgtgtcagatcaaccacatggga---gtaatccatctgtgattgtgagctatctccaactagccttgcgtccct 280  Q
    ||||||||| || ||||||| |||||||||| |||||   |||||||||||| || |||||||  |||||||||||||| | ||||||    
T  13952456 catactcatacgtttgtgtcggatcaaccacctgggaagagtaatccatctgcgactgtgagccctctccaactagcctcgagtccct 13952543  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 11406123 - 11406214
Alignment:
Q  49 atctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacg 140  Q
    ||||| ||||||||||||||||    |||||||||| |  | ||||   |||||||| |||||||||| |||||||| ||||||||||||||    
T  11406123 atctccttaggcatctcagggagaattgacggatgtttgagaatgtccagtataaagccaaactgcctcttaacccgttcaggtaaatgacg 11406214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 28509759 - 28509837
Alignment:
Q  193 cggcatactcatgcgcttgtgtcagatcaaccacatgggagtaatccatctgtgattgtgagctatctccaactagcct 271  Q
    |||||||||| || ||  ||||| |||||||||| || | ||||||||||||||| |||||||  |||||| |||||||    
T  28509759 cggcatactcctgtgcaggtgtcggatcaaccacctgcgtgtaatccatctgtgactgtgagccctctccacctagcct 28509837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 41963976 - 41963934
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  41963976 acccgctcaggtaaatgacggtacaccctctccttcctgcaca 41963934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 31593596 - 31593493
Alignment:
Q  186 gcatacccggcatactcatgcgcttgtgtcagatcaaccacatgggag---taatccatctgtgattgtgagctatctccaactagccttgcgtcccttc 282  Q
    ||||||||  |||| ||||||||| ||||| |||||||||| ||||||   ||||||| ||||| ||||||||  |||||| ||| ||| | |||||| |    
T  31593596 gcatacccaacataatcatgcgctggtgtcggatcaaccacctgggaggagtaatccacctgtgcttgtgagccctctccatctatcctcgggtccctgc 31593497  T
Q  283 gctt 286  Q
    ||||    
T  31593496 gctt 31593493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 27188 - 27044
Alignment:
Q  30 tatcaacaaagtagccaaaatctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctca 129  Q
    |||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||| ||||||| |||| ||||| ||||||| ||  ||||| || ||    
T  27188 tatcaacaaagtagccaacatctcctttggcatctcagggacatctgatggatgtctggggatgtaatgtttaaagccaaactggctcgtaacctgccca 27089  T
Q  130 ggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||||||||| |||||| | ||| ||||||||| |||| |||||    
T  27088 ggtaaatgacggtacaccttttccttcccgcacataagttatccc 27044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 20723359 - 20723215
Alignment:
Q  30 tatcaacaaagtagccaaaatctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctca 129  Q
    |||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||| ||||||| |||| ||||| ||||||| ||  ||||| || ||    
T  20723359 tatcaacaaagtagccaacatctcctttggcatctcagggacatctgatggatgtctggggatgtaatgtttaaagccaaactggctcgtaacctgccca 20723260  T
Q  130 ggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||||||||| |||||| | ||| ||||||||| |||| |||||    
T  20723259 ggtaaatgacggtacaccttttccttcccgcacataagttatccc 20723215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 21832115 - 21831990
Alignment:
Q  173 cctcaaatccccc-gcatacccggcatactcatgcgcttgtgtcagatcaaccacatg---ggagtaatccatctgtgattgtgagctatctccaactag 268  Q
    ||||||||||||| |||||| || |||||||||||||||||||| ||||||||||  |   ||||||||| |||||||| ||||||||||||||||||||    
T  21832115 cctcaaatccccccgcatactcgacatactcatgcgcttgtgtcggatcaaccactcgggaggagtaatctatctgtgactgtgagctatctccaactag 21832016  T
Q  269 ccttgcgtcccttcgctttcgggtct 294  Q
    ||| | |||||| || ||||| ||||    
T  21832015 cctcgggtccctgcgttttcgagtct 21831990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 21833219 - 21833075
Alignment:
Q  30 tatcaacaaagtagccaaaatctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctca 129  Q
    |||||||| || |||||  ||||| ||||| ||||||| ||| |||||||||||| | || |||| ||||| ||||  ||||||||  |||||||||||     
T  21833219 tatcaacacaggagccagcatctccttaggaatctcagcgacatctgacggatgtttgggaatgtcatgtacaaaggaaaactgccacttaacccgctct 21833120  T
Q  130 ggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||||||||  |||||||||| | ||||||||| ||| ||||||    
T  21833119 ggtaaatgacagtacaccctcttcttcccgcacataagccatccc 21833075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 26391298 - 26391235
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    |||||| || |||||||||||||||||||| |||||||||||| |||||||||| || ||||||    
T  26391298 ctgcctctttacccgctcaggtaaatgacggtacaccctctccttcccgcacactagccatccc 26391235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 29901931 - 29901865
Alignment:
Q  97 tgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||||| ||||| || ||||||    
T  29901931 tgtacaaagtcaaacaacctttttacccgctcaggtaaatgacgatacaccttctccttctcgcaca 29901865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 31501548 - 31501666
Alignment:
Q  56 taggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgt 155  Q
    |||||| || |||||| |||||||||||||| || | ||  |||| ||||   || ||||| || |||||||||||||||||||  |||||||||||| |    
T  31501548 taggcacctgagggacatctgacggatgtctgggaacgtcttgtacaaaggataattgcctctttacccgctcaggtaaatgacagtacaccctctcctt 31501647  T
Q  156 cccgcacacaagtcatccc 174  Q
    ||||||||  |||||||||    
T  31501648 cccgcacatgagtcatccc 31501666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 2120329 - 2120371
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  2120329 acccgctcaggtaaatgacggtacaccctctccttcccgcaca 2120371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 2776792 - 2776750
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  2776792 acccgctcaggtaaatgacgatacaccctttccttcccgcaca 2776750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 26172420 - 26172366
Alignment:
Q  232 agtaatccatctgtgattgtgagctatctccaactagccttgcgtcccttcgctt 286  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||| |||||    
T  26172420 agtaatccatttgtgactgtgagctatctccaactagcctcgggtccctgcgctt 26172366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 28652313 - 28652261
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| || ||||||||||||||||||||  ||||||||||| |||||||||    
T  28652313 ctgcctctttacccgctcaggtaaatgacgcaacaccctctccttcccgcaca 28652261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 695215 - 695267
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    |||||||||||||||||||| |||||||||||| | |||||||  |||||||||    
T  695215 acccgctcaggtaaatgacggtacaccctctcc-ttccgcacatcagtcatccc 695267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 4174455 - 4174403
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| || |||||||||||||||||||| |||||| ||||| |||| ||||    
T  4174455 ctgcctctttacccgctcaggtaaatgacggtacaccatctccttcccacaca 4174403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 13826709 - 13826831
Alignment:
Q  41 tagccaaaatctcattaggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacg 140  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||  ||||||||| ||| || ||| ||||| |||||||||||||||||    
T  13826709 tagccaacatctccttaggcatctcagggacatctgacggatgtctggggatgtcctgtataaagccaagctacctcttaactcgctcaggtaaatgacg 13826808  T
Q  141 atacaccctctccgtcccgcaca 163  Q
     |||| ||||||| || ||||||    
T  13826809 gtacatcctctccttctcgcaca 13826831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 180784 - 180846
Alignment:
Q  112 tgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||| || |||||||||||||||||||| |||||||||||| |||||||||  |||||||||    
T  180784 tgcctctttacccgctcaggtaaatgacggtacaccctctccttcccgcacatcagtcatccc 180846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 55150537 - 55150440
Alignment:
Q  66 agggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| |||||||||||||| || | || ||||| ||||   ||||| || || ||||||||| |||||| |||||||||||||||| |||||||||    
T  55150537 agggacatctgacggatgtctgggaacgtcatgtacaaaggataactgtctctttacccgctcatgtaaataacgatacaccctctccttcccgcaca 55150440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 45034328 - 45034265
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    |||||| || |||||||||||||||| ||| |||||||||||| |||||||||  |||||||||    
T  45034328 ctgcctctttacccgctcaggtaaattacggtacaccctctccttcccgcacatcagtcatccc 45034265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 52560743 - 52560691
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| || |||||||||||||||||||| |||||||||||| ||| |||||    
T  52560743 ctgcctctttacccgctcaggtaaatgacggtacaccctctccttcctgcaca 52560691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 18907854 - 18907803
Alignment:
Q  112 tgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    ||||| || |||||||||||||||||||| |||||||||||| ||| |||||    
T  18907854 tgcctctttacccgctcaggtaaatgacggtacaccctctccttcctgcaca 18907803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 48164465 - 48164402
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    |||||| || |||||||||||||||||||| |||| | ||||| |||||||||  |||||||||    
T  48164465 ctgcctctttacccgctcaggtaaatgacggtacatcatctccttcccgcacatcagtcatccc 48164402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 48162573 - 48162485
Alignment:
Q  201 tcatgcgcttgtgtcagatcaaccacatgggag---taatccatctgtgattgtgagctatctccaactagccttgcgtcccttcgctt 286  Q
    ||||||||| ||||| |||||||||| ||||||   |||||||| |||| ||||||||| ||| || || |||| |||||||| |||||    
T  48162573 tcatgcgctggtgtcggatcaaccacctgggaggagtaatccatatgtggttgtgagctctctacacctggcctcgcgtccctccgctt 48162485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 8888 - 8791
Alignment:
Q  66 agggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| |||| | ||||||| || ||||  |||| | || ||| |||||| || |||||||||||||||||||| |||||||| ||| ||| |||||    
T  8888 agggacatctggcagatgtctgggaatgtcctgtacatagacaagctgcctctttacccgctcaggtaaatgacggtacaccctatccttcctgcaca 8791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 31387229 - 31387132
Alignment:
Q  66 agggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| ||||||||||||||||| | || ||||| ||||   |||||||| || || ||||||||||||||||| |||||||||||| |||||||||    
T  31387229 agggacatctgacggatgtctaggaacgtcatgtacaaaggataactgcctctttactcgctcaggtaaatgacggtacaccctctccttcccgcaca 31387132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 4912348 - 4912464
Alignment:
Q  57 aggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtc 156  Q
    ||||| || |||||| |||||| ||||||| || | |||||||| ||||   ||||| || || |||||||||||||||||||| |||||||||||| ||    
T  4912348 aggcacctgagggacatctgacagatgtctcggaacgttatgtacaaaggataactgtctctttacccgctcaggtaaatgacggtacaccctctccttc 4912447  T
Q  157 ccgcacacaagtcatcc 173  Q
    |||||||  ||||||||    
T  4912448 ccgcacatgagtcatcc 4912464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 50914579 - 50914482
Alignment:
Q  66 agggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| |||||||||||||| || | ||  |||| ||||   |||||||| || |||||||||||||||||||| |||||||||||| |||||||||    
T  50914579 agggacatctgacggatgtctgggaacgtcctgtacaaaggataactgcctctttacccgctcaggtaaatgacggtacaccctctccttcccgcaca 50914482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 15292066 - 15292108
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  15292066 acccgctcaggtaaatgacggtacaccctctccttcccgcaca 15292108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 18242664 - 18242546
Alignment:
Q  56 taggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgt 155  Q
    |||||| || |||||| ||| |||||||||| || | ||  |||| ||||   ||||| || || |||||||||||||||||||  |||||||||||| |    
T  18242664 taggcacctgagggacatcttacggatgtctgggaacgtcttgtacaaaggataactgtctctttacccgctcaggtaaatgacagtacaccctctcctt 18242565  T
Q  156 cccgcacacaagtcatccc 174  Q
    ||||||||  |||||||||    
T  18242564 cccgcacatgagtcatccc 18242546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 27106501 - 27106554
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||| |||||||||||||| |||||||||||| |||||||||  |||||||||    
T  27106501 acccgttcaggtaaatgacggtacaccctctccttcccgcacatgagtcatccc 27106554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 42464034 - 42464141
Alignment:
Q  56 taggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgt 155  Q
    |||||| || |||||| |||||||||||||| || | ||  | || ||||   |||||||| || |||| ||||||||||||||| |||||| ||||| |    
T  42464034 taggcacctgagggacatctgacggatgtctgggaacgtcctatacaaaggataactgcctctttacccactcaggtaaatgacggtacaccatctcctt 42464133  T
Q  156 cccgcaca 163  Q
    ||||||||    
T  42464134 cccgcaca 42464141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 42056216 - 42056268
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||| || |||| |||| ||||||||||||||||| ||||| |||||||||    
T  42056216 ctgcctctttacccactcatgtaaatgacgatacaccttctccttcccgcaca 42056268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 46192770 - 46192822
Alignment:
Q  122 cccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||||||||||||||||| |||| ||||| | |||||||||  |||||||||    
T  46192770 cccgctcaggtaaatgacggtacatcctcttcttcccgcacatcagtcatccc 46192822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 23713936 - 23714032
Alignment:
Q  78 cggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatccc 174  Q
    ||||||||| |||| || |||||||||| |||||||||  ||||| | || ||||||| |||| |||||||||||| ||||||||| ||||||||||    
T  23713936 cggatgtcttgggacgtcatgtataaaggcaaactgccacttaactcacttaggtaaacgacggtacaccctctccttcccgcacataagtcatccc 23714032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 23715518 - 23715647
Alignment:
Q  170 atccctcaaatcccc--cgcatacccggcatactcatgcgcttgtgtcagatcaaccacatgg---gagtaatccatctgtgattgtgagctatctccaa 264  Q
    |||||||||||||||  ||||||||| |||||||||||| | ||||||||||||||||| |||   ||||||||||||||| | | |||||| ||| ||     
T  23715518 atccctcaaatcccccccgcatacccagcatactcatgcacctgtgtcagatcaaccacttgggaagagtaatccatctgttactatgagctctctacac 23715617  T
Q  265 ctagccttgcgtcccttcgctttcgggtct 294  Q
    || | || |||||||| |||||||| ||||    
T  23715618 cttgtctcgcgtccctacgctttcgagtct 23715647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 23878756 - 23878691
Alignment:
Q  188 atacccggcatactcatgcgcttgtgtcagatcaaccacatgggagtaatccatctgtgattgtga 253  Q
    ||||| |||||||||||||||||||||  ||||||||||   ||||||||||||||||||||||||    
T  23878756 atacctggcatactcatgcgcttgtgttggatcaaccaccctggagtaatccatctgtgattgtga 23878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 44116330 - 44116433
Alignment:
Q  56 taggcatctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgt 155  Q
    |||||| || |||||| ||||| |||||||| || | ||  |||| ||||   |||||||| || |||||||||||||||||||| |||||||||||| |    
T  44116330 taggcacctaagggacatctgatggatgtctgggaacgtcctgtacaaaggataactgcctctttacccgctcaggtaaatgacggtacaccctctcctt 44116429  T
Q  156 cccg 159  Q
    ||||    
T  44116430 cccg 44116433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 55740613 - 55740697
Alignment:
Q  186 gcatacccggcatactcatgcgcttgtgtcagatcaaccacatg---ggagtaatccatctgtgattgtgagctatctccaacta 267  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| ||   |||||||||||| ||||  || ||||||||||||||||    
T  55740613 gcatacccgacatactcttgcgcctgtgtcagatcaaccacctgagaggagtaatccatatgtgtctgcgagctatctccaacta 55740697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 12025362 - 12025402
Alignment:
Q  123 ccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  12025362 ccgctcaggtaaatgacgatacaccctcttcttcccgcaca 12025402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 55763429 - 55763324
Alignment:
Q  186 gcatacccggcatactcatgcgcttgtgtcagatcaaccacat---gggagtaatccatctgtgattgtgagctatctccaactagccttgcgtcccttc 282  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||| |    |||||||||||| ||||  || |||||||||||||||| ||| | || ||| |    
T  55763429 gcatacccgacatactcttgcgcctgtgttagatcaaccacctaggaggagtaatccatttgtgtctgcgagctatctccaactaccctcgggttcctgc 55763330  T
Q  283 gctttc 288  Q
    ||||||    
T  55763329 gctttc 55763324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 9039359 - 9039421
Alignment:
Q  111 ctgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcacacaagtcatcc 173  Q
    |||||| || |||||||||||||||||||| ||| |||||||| |||||||||  ||||||||    
T  9039359 ctgcctctttacccgctcaggtaaatgacggtaccccctctccttcccgcacatcagtcatcc 9039421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 37980740 - 37980779
Alignment:
Q  124 cgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  37980740 cgctcaggtaaatgacggtacaccctctccttcccgcaca 37980779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 7253181 - 7253139
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||||||||||||||||| ||||||| |||| |||||||||    
T  7253181 acccgctcaggtaaatgacggtacaccccctccttcccgcaca 7253139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 19876261 - 19876223
Alignment:
Q  125 gctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  19876261 gctcaggtaaatgacggtacaccctctccttcccgcaca 19876223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 23066896 - 23066854
Alignment:
Q  121 acccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    |||||||||||||||||| | |||||||||||| |||||||||    
T  23066896 acccgctcaggtaaatgatggtacaccctctccttcccgcaca 23066854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 5619973 - 5619922
Alignment:
Q  112 tgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgcaca 163  Q
    ||||| || |||| ||||||||||||||| |||||||||||| |||||||||    
T  5619973 tgcctctttacccactcaggtaaatgacggtacaccctctccttcccgcaca 5619922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 19269207 - 19269262
Alignment:
Q  97 tgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctc 152  Q
    |||| ||| ||||||||||| |  |||||||||||||||||||| |||||||||||    
T  19269207 tgtacaaactcaaactgcctctatacccgctcaggtaaatgacggtacaccctctc 19269262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 63153 - 63255
Alignment:
Q  61 atctcagggacttctgacggatgtctagggatgttatgtataaagtcaaactgccttttaacccgctcaggtaaatgacgatacaccctctccgtcccgc 160  Q
    ||||||||||| |||||| ||||||| |||||||   ||||| |  ||||  |||| || |||||||||||||||||| | |||||| ||||| ||| ||    
T  63153 atctcagggacatctgacagatgtctggggatgtccagtatatacccaaagggcctcttcacccgctcaggtaaatgatggtacaccatctccttcctgc 63252  T
Q  161 aca 163  Q
    |||    
T  63253 aca 63255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 85913 - 85981
Alignment:
Q  212 tgtcagatcaaccacatgggagtaatccatctgtgattgtgagctatctccaactagccttgcgtccct 280  Q
    |||| |||||||||| ||  |||||||||||||||| |||||||  |||||| |||||||  |||||||    
T  85913 tgtcggatcaaccacctgcaagtaatccatctgtgactgtgagccctctccacctagcctcacgtccct 85981  T

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Target: scaffold0916 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 1271 - 1230
Alignment:
Q  230 ggagtaatccatctgtgattgtgagctatctccaactagcct 271  Q
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T  1271 ggagtaatccatctgtgactgtgagccctctccaactagcct 1230  T

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