View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11780_low_47 (Length: 289)
Name: NF11780_low_47
Description: NF11780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11780_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 5719592 - 5719333
Alignment:
| Q |
14 |
tcaataaaaccagtcatcctaagaatcgaattcctaaccctgctcaaatcccttcccttcaaagtcctcccatgcccagaacacatggaaaatgtcattt |
113 |
Q |
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| T |
5719592 |
tcaataaaaccagtcatcctaagaatcgaattcctaaccctgctcaaatcccttcccttcaaagtcctcccatgcccagaacacatggaaaatgtcattt |
5719493 |
T |
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| Q |
114 |
ttccagctagcctccgcgccataatcaggtgcggaggcaccatctcctcctcatcctcgtcctcctcatagccattacccctccggtgaaatatcccctc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5719492 |
ttccagctagcctccgcgccataatcaggtgcggaggcaccatctcctcctcatcctcgtcctcctcatagccatttcccctccggtgaaatatcccctc |
5719393 |
T |
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| Q |
214 |
agacgggatattcatcggcatggacctcaccatcttgttgtcagcagcttgatcaatttc |
273 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719392 |
agaggggatattcatcggcatggacctcaccatcttgttgtcagcagcttgatcaatttc |
5719333 |
T |
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